KosukeHamazaki / RAINBOWRLinks
Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
☆24Updated 2 months ago
Alternatives and similar repositories for RAINBOWR
Users that are interested in RAINBOWR are comparing it to the libraries listed below
Sorting:
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆54Updated 3 months ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 8 months ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 7 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆43Updated 6 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆34Updated 5 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated 3 weeks ago
- Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction☆46Updated 8 months ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆30Updated 2 months ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- https://filippob.github.io/introduction_to_gwas/☆21Updated 5 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Evolutionary Transcriptomics with R☆49Updated 3 weeks ago
- Here we present a method to plot the outputs of RFMIX version 2☆28Updated last year
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆41Updated 2 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆23Updated 2 years ago
- Upscaling SV detection to a multi-population level.☆22Updated 4 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- Repository for pipeline code☆26Updated last year
- Haplotype and population structure inference using neural networks.☆27Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆43Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 8 months ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆13Updated 4 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- ☆18Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Structural variant merging tool☆57Updated last year