Alternatives and similar repositories for RAINBOWR:

Users that are interested in RAINBOWR are comparing it to the libraries listed below

• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆30Updated 11 months ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆34Updated 2 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆29Updated last year
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 2 months ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆15Updated last week
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆56Updated 3 months ago
• caulilin / QTG_Seq
  ☆21Updated 6 years ago
• CshlSiepelLab / arg-selection
  ARG-based inference of selection using deep learning
  ☆18Updated last year
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆33Updated 10 months ago
• ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files
  A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…
  ☆18Updated last year
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆25Updated 2 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆27Updated 3 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆24Updated 4 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆21Updated 7 years ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆30Updated last year
• hemstrow / snpR
  ☆29Updated last week
• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆49Updated last year
• jaredgk / PPP
  Repository for pipeline code
  ☆24Updated 11 months ago
• evodify / allele-specific-expression
  Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
  ☆11Updated 6 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆24Updated 5 years ago
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆23Updated 2 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 2 months ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆33Updated 3 years ago
• whweve / IntAssoPlot
  ☆16Updated last year
• guokai8 / CandiHap
  Build haplotye and generate figures
  ☆18Updated 3 years ago