KosukeHamazaki / RAINBOWRLinks
Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
☆24Updated last month
Alternatives and similar repositories for RAINBOWR
Users that are interested in RAINBOWR are comparing it to the libraries listed below
Sorting:
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 7 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆54Updated last month
- Perform GWAS with gemma in a simple pipeline☆27Updated 6 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆64Updated last month
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆36Updated 2 years ago
- ☆18Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Upscaling SV detection to a multi-population level.☆22Updated 3 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 10 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- Repository for pipeline code☆26Updated last year
- A haplotype analysis toolkit for natural variation study.☆30Updated 2 years ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆30Updated last month
- The cattle Genotype-Tissue Expression atlas v1☆27Updated 2 years ago
- RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."☆25Updated 2 years ago
- https://filippob.github.io/introduction_to_gwas/☆21Updated 3 months ago
- Generalized linear Mixed Model Association Tests☆44Updated last year
- Evolutionary Transcriptomics with R☆46Updated 2 weeks ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- R-package: Calculation of haplotype blocks and libraries☆33Updated 3 months ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆31Updated 10 months ago
- Canonical SGE cluster genotype imputation pipeline☆12Updated 9 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction☆46Updated 6 months ago
- MEGAnE☆33Updated 2 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆23Updated 2 years ago