A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizing results
☆20Oct 14, 2017Updated 8 years ago
Alternatives and similar repositories for gwas-scripts
Users that are interested in gwas-scripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- https://filippob.github.io/introduction_to_gwas/☆22Jun 8, 2026Updated last month
- Pipeline for genetic epidemiology projects at Univsersity of Bristol☆15Jul 15, 2026Updated last week
- A tool to plot significant regions of GWAS☆30Jan 27, 2023Updated 3 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated 6 months ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Instructions and helpful R code for Running GEMMA and GAPIT☆13Sep 14, 2017Updated 8 years ago
- Python script for multivariate GWAS meta-analysis☆25Dec 6, 2024Updated last year
- Fine-mapping with infinitesimal effects☆20May 5, 2026Updated 2 months ago
- R package to perform Bayesian Genome-Wide Association Studies☆40Oct 10, 2023Updated 2 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆16Jun 28, 2021Updated 5 years ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆36Aug 9, 2019Updated 6 years ago
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 11 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆14Mar 14, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Software and analysis of metabolism studies across multiple cancer types☆11Sep 5, 2017Updated 8 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆17Apr 8, 2021Updated 5 years ago
- Working on cotton resequencing☆11Jun 2, 2020Updated 6 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Mar 20, 2023Updated 3 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Apr 1, 2026Updated 3 months ago
- RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."☆27Apr 25, 2023Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Script to calculate polygenic risk scores in a genotyped sample using GWAS summary statistics from a disease/trait.☆19Apr 17, 2018Updated 8 years ago
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 11 months ago
- ☆10Feb 25, 2024Updated 2 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆34Jun 26, 2026Updated 3 weeks ago
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 6 years ago
- ☆37Feb 19, 2022Updated 4 years ago
- Repository☆10Oct 23, 2024Updated last year
- ☆11Dec 20, 2024Updated last year
- Manhattan plot Generator☆25Jun 1, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Make LocusZoom-like plots with your own LD matrix.☆51Jul 17, 2022Updated 4 years ago
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 3 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆49Dec 16, 2024Updated last year
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Jun 15, 2026Updated last month
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 6 years ago
- Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT☆22Dec 5, 2018Updated 7 years ago