saralpulit / gwas-scriptsLinks
A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizing results
☆20Updated 7 years ago
Alternatives and similar repositories for gwas-scripts
Users that are interested in gwas-scripts are comparing it to the libraries listed below
Sorting:
- A tool to plot significant regions of GWAS☆30Updated 2 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated 2 years ago
- TWAS-pipeline☆22Updated 4 years ago
- Readme☆10Updated 5 years ago
- Cross-population fine-mapping☆38Updated 8 months ago
- ☆60Updated 3 years ago
- Quality control steps for GWAS☆24Updated last year
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆40Updated 7 months ago
- ☆23Updated 4 years ago
- ☆20Updated 2 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Updated 9 months ago
- Code supporting analyses in paper on fine-mapping AD loci☆16Updated 4 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Updated 2 years ago
- A Toolset for Chromosome X-Wide Association Studies☆12Updated 7 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆30Updated 8 months ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆23Updated 8 months ago
- Enhanced version of the FastQTL QTL mapper☆67Updated 2 years ago
- R package to perform Bayesian Genome-Wide Association Studies☆40Updated last year
- Make LocusZoom-like plots with your own LD matrix.☆44Updated 3 years ago
- a set of NGS pipelines☆24Updated last week
- GTEx analysis scripts☆20Updated 8 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆53Updated last year
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- Script used to identify de novo variants from sequencing data.☆12Updated 8 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 8 months ago
- ☆23Updated 4 years ago
- a bucket of bioinformatics scripts☆13Updated 2 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- ☆40Updated 7 years ago