Alternatives and similar repositories for locuszoom

Users that are interested in locuszoom are comparing it to the libraries listed below

• konradjk / loftee
  ☆180Updated 2 years ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆224Updated last year
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆114Updated 6 years ago
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆156Updated last month
• geocarvalho / sv-cnv-studies
  Relevant papers for CNV and SV approaches
  ☆93Updated 10 months ago
• lima1 / PureCN
  Copy number calling and variant classification using targeted short read sequencing
  ☆140Updated 3 weeks ago
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆174Updated 9 months ago
• ndaniel / fusioncatcher
  Finder of Somatic Fusion Genes in RNA-seq data
  ☆147Updated last week
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆135Updated last year
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆145Updated 2 years ago
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆140Updated 3 years ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆116Updated 9 months ago
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆116Updated last year
• broadinstitute / gnomad_methods
  Hail helper functions for the gnomAD project and Translational Genomics Group
  ☆96Updated this week
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆144Updated last month
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆172Updated last year
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆140Updated 3 weeks ago
• yupenghe / methylpy
  WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
  ☆145Updated 2 years ago
• mskcc / facets
  Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
  ☆151Updated 2 years ago
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆83Updated 6 years ago
• getzlab / rnaseqc
  Fast, efficient RNA-Seq metrics for quality control and process optimization
  ☆174Updated 10 months ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆106Updated 3 months ago
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆111Updated 3 months ago
• ENCODE-DCC / rna-seq-pipeline
  ☆155Updated 2 years ago
• Ensembl / WiggleTools
  Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
  ☆151Updated 10 months ago
• EGA-archive / ega-download-client
  A Python-based EGA download client
  ☆106Updated last year
• nygenome / lancet
  Microassembly based somatic variant caller for NGS data
  ☆154Updated 3 years ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆136Updated 2 years ago
• bmvdgeijn / WASP
  WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
  ☆106Updated 4 years ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆138Updated 5 years ago