vatlab / varianttoolsLinks
software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
☆30Updated 3 years ago
Alternatives and similar repositories for varianttools
Users that are interested in varianttools are comparing it to the libraries listed below
Sorting:
- Generic human DNA variant annotation pipeline☆59Updated last year
- An awk-like VCF parser☆56Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆38Updated 2 years ago
- FusionInspector code☆58Updated 3 months ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- GEM-Mapper v3☆58Updated 2 weeks ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Genomic VCF to tab-separated values☆48Updated 2 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 3 months ago
- Fast fusion detection using kallisto☆79Updated 6 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Powerful statistics for VCF files☆72Updated 3 weeks ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- create a gemini-compatible database from a VCF☆55Updated 4 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- ☆55Updated 5 years ago