vatlab / varianttoolsLinks
software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
☆31Updated 3 years ago
Alternatives and similar repositories for varianttools
Users that are interested in varianttools are comparing it to the libraries listed below
Sorting:
- ☆35Updated 3 years ago
- (WIP) best-practices workflow for rare disease☆60Updated 11 months ago
- conda recipes for genomic data☆85Updated 3 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 3 weeks ago
- Fast fusion detection using kallisto☆80Updated 7 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆69Updated 6 months ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- FRASER - Find RAre Splicing Events in RNA-seq☆46Updated last week
- The command-line interface to GGD☆43Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 7 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- ☆51Updated 5 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 3 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- FusionInspector code☆57Updated 2 weeks ago