argriffing / eigensoftLinks
principal components population genetics analysis on linux
☆20Updated 4 years ago
Alternatives and similar repositories for eigensoft
Users that are interested in eigensoft are comparing it to the libraries listed below
Sorting:
- Fast analysis and visualization of latent clusters in population genetic data☆77Updated 3 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 8 months ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Haplotype based scans for selection☆137Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆43Updated 6 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆41Updated 2 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 7 months ago
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Demographic analysis of Brassica oleracea☆10Updated last month
- Transposable element polymorphism identification☆34Updated 5 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Updated 2 months ago
- tutorial on pggb☆36Updated 11 months ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Estimate recombination rates from population genetic data☆70Updated 5 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated 11 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆35Updated 5 months ago
- MEGAnE☆33Updated 2 years ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆94Updated 3 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last month
- Here we present a method to plot the outputs of RFMIX version 2☆29Updated last year
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 5 years ago
- Scripts for GWAS association and metaanalysis☆43Updated 5 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆54Updated 3 months ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆85Updated last month
- A software for calculating telomere length☆72Updated 7 years ago