Alternatives and similar repositories for eigensoft

Users that are interested in eigensoft are comparing it to the libraries listed below

• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆64Updated this week
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆88Updated 2 years ago
• genepi-freiburg / gwas
  Scripts for GWAS association and metaanalysis
  ☆43Updated 4 years ago
• zhengxwen / SNPRelate
  R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)
  ☆107Updated 8 months ago
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆22Updated 5 months ago
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆67Updated 5 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆42Updated last year
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 6 years ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆73Updated 3 years ago
• PapenfussLab / sv_benchmark
  Comprehensive benchmark of structural variant callers
  ☆46Updated 4 years ago
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• joepickrell / 1000-genomes-genetic-maps
  Genetic maps interpolated to sites in the 1000 Genomes project
  ☆49Updated 10 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆26Updated 2 months ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆35Updated last year
• fhormoz / caviar
  ☆60Updated 3 years ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• Oshlack / STRetch
  Method for detecting STR expansions from short-read sequencing data
  ☆63Updated 3 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago
• jendelman / GWASpoly
  GWAS software that can handle autopolyploids
  ☆28Updated 9 months ago
• ANGSD / NgsRelate
  ☆43Updated 3 months ago
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆24Updated this week
• mathii / gdc
  Short scripts for converting genetic data between formats.
  ☆29Updated 2 years ago
• odelaneau / shapeit4
  Segmented HAPlotype Estimation and Imputation Tool
  ☆94Updated last year
• rwdavies / STITCH
  STITCH - Sequencing To Imputation Through Constructing Haplotypes
  ☆81Updated 3 weeks ago
• ramachandran-lab / pong
  Fast analysis and visualization of latent clusters in population genetic data
  ☆75Updated 3 years ago
• evotools / hapbin
  Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
  ☆45Updated 5 years ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆38Updated 3 months ago