argriffing / eigensoftLinks
principal components population genetics analysis on linux
☆20Updated 4 years ago
Alternatives and similar repositories for eigensoft
Users that are interested in eigensoft are comparing it to the libraries listed below
Sorting:
- Fast analysis and visualization of latent clusters in population genetic data☆78Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆43Updated 2 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆39Updated 10 months ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 9 months ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆56Updated 5 months ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆85Updated 2 weeks ago
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- Haplotype based scans for selection☆140Updated last month
- Pipeline to take VCF through to Selection Analysis.☆58Updated 3 years ago
- Scripts for GWAS association and metaanalysis☆43Updated 5 years ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- tutorial on pggb☆36Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆32Updated last year
- De novo annotation of young retrotransposons☆47Updated 3 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆66Updated 3 weeks ago
- A set of tools for modelling ancestry patterns along the genome.☆23Updated 2 weeks ago
- Here we present a method to plot the outputs of RFMIX version 2☆31Updated last year
- analysis and plotting code for "Admixture into and within Africa" by George Busby et al 2016 (eLife)☆12Updated 9 years ago
- Population genetics analyses from NGS data☆26Updated 4 years ago
- Estimate recombination rates from population genetic data☆71Updated 5 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Updated 6 years ago
- Methods for examining PCA locally along the genome.☆88Updated last year
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12Updated 8 months ago
- Short scripts for converting genetic data between formats.☆30Updated 3 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- R code to compute the Singleton Density Score (SDS)☆30Updated 9 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago