swvanderlaan / GWASToolKit
A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
☆17Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for GWASToolKit
- RNA-seq analysis scripts☆15Updated 2 years ago
- Functional Enrichment Analysis and Network Construction☆9Updated 4 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆11Updated 5 years ago
- Readme☆10Updated 4 years ago
- Fine-mapping with infinitesimal effects☆14Updated 8 months ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆16Updated 2 weeks ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆13Updated 2 years ago
- Fast manhattenplots using ggplot2☆9Updated 9 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- mitochondrial variant analysis tools☆13Updated 3 years ago
- ☆17Updated last week
- ☆10Updated 3 weeks ago
- lncRNA分析流程☆8Updated 6 years ago
- Interactive eQTL visualizations☆13Updated last year
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Updated 3 weeks ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- ☆15Updated 9 months ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆24Updated 2 years ago
- PredictDB Pipeline for GTEx v7 data☆18Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated last month
- Tao Yan's Plot Toolkit☆11Updated 5 years ago
- ☆8Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Documentation for vcfR☆10Updated last year
- RNAseq analysis with Hisat2, stringtie, and ballgown☆13Updated 5 years ago
- TWAS-pipeline☆21Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆17Updated 3 weeks ago
- https://filippob.github.io/introduction_to_gwas/☆17Updated 4 months ago
- Python function for TMB snake plots☆16Updated 4 years ago
- genetic correlation between phenotypes in the UK biobank☆13Updated 9 months ago