Alternatives and similar repositories for GWASToolKit

Users that are interested in GWASToolKit are comparing it to the libraries listed below

• Shicheng-Guo / HowtoBook
  Readme
  ☆10Updated 5 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆23Updated 4 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• ipdgc / Manhattan-Plotter
  This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3
  ☆13Updated 6 years ago
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated 2 months ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆20Updated last month
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆32Updated 4 months ago
• adhikari-statgen-lab / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated last week
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated 2 weeks ago
• derekmichaelwright / gwaspr
  An R package for plotting GWAS results from the GAPIT package
  ☆13Updated this week
• Xinglab / Myc-regulated_AS_PrCa_paper
  Scripts for plotting figures and running analysis throughout the manuscript
  ☆11Updated 3 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• iaaaka / evo-devo
  ☆12Updated 4 years ago
• atgu / GWASpy
  GWAS QC, PCA, haplotype phasing, genotype imputation
  ☆18Updated last month
• bernatgel / regioneR
  An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
  ☆13Updated 4 months ago
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆17Updated 4 months ago
• smgogarten / GWASTools
  Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
  ☆18Updated 6 months ago
• dongwei1220 / R-Data-Visualization
  Data visualization with R
  ☆12Updated 4 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• knausb / vcfR_documentation
  Documentation for vcfR
  ☆11Updated 4 months ago
• Xinglab / GTEx-brain-sQTL
  ☆13Updated 5 years ago
• MCorentin / vargen
  VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…
  ☆17Updated last year
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆41Updated last year
• markrobinsonuzh / diff_splice_paper
  Code for differential splicing comparison paper (Soneson, Matthes, et al.)
  ☆20Updated 9 years ago
• naumenko-sa / bioscripts
  a bucket of bioinformatics scripts
  ☆13Updated last week
• flemingtonlab / SpliceTools
  ☆17Updated last year
• Baldridge37 / RNAseq_with_Hisat2_stringtie
  RNAseq analysis with Hisat2, stringtie, and ballgown
  ☆17Updated 6 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated last year
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago