swvanderlaan / GWASToolKit
A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
☆17Updated 2 weeks ago
Related projects: ⓘ
- RNA-seq analysis scripts☆15Updated 2 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆19Updated 6 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆11Updated 5 years ago
- ☆16Updated 4 months ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆17Updated 2 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆16Updated 4 months ago
- Readme☆10Updated 4 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆12Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated this week
- ☆13Updated 2 years ago
- genetic correlation between phenotypes in the UK biobank☆13Updated 6 months ago
- Documentation for vcfR☆10Updated last year
- RNAseq analysis with Hisat2, stringtie, and ballgown☆13Updated 5 years ago
- Filter and prioritize fusion calls☆20Updated last month
- TWAS-pipeline☆21Updated 3 years ago
- ☆14Updated last year
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆9Updated last month
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 5 years ago
- Interactive eQTL visualizations☆13Updated last year
- Bioinformatics Pipeline☆12Updated last year
- ☆12Updated 3 years ago
- Functional Enrichment Analysis and Network Construction☆9Updated 4 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆24Updated 2 years ago
- Fine-mapping with infinitesimal effects☆13Updated 6 months ago
- A flexible R package for weighted principal component case control matching☆9Updated 5 months ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆11Updated 7 months ago
- lncRNA分析流程☆8Updated 5 years ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆14Updated 2 weeks ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆16Updated this week
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆17Updated last month