swvanderlaan / GWASToolKitLinks
A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
☆18Updated 11 months ago
Alternatives and similar repositories for GWASToolKit
Users that are interested in GWASToolKit are comparing it to the libraries listed below
Sorting:
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- TWAS-pipeline☆24Updated 4 years ago
- Readme☆10Updated 5 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆13Updated 6 years ago
- RNA-seq analysis scripts☆15Updated 3 months ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆32Updated 4 months ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆20Updated 2 months ago
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆13Updated 5 months ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Updated 6 years ago
- Fine-mapping with infinitesimal effects☆19Updated 5 months ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆18Updated 2 months ago
- a set of NGS pipelines☆24Updated last week
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 3 weeks ago
- ☆24Updated 4 years ago
- Fast manhattenplots using ggplot2☆13Updated last year
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago
- Query the gene models of a given organism/assembly☆27Updated this week
- A Toolset for Chromosome X-Wide Association Studies☆12Updated 7 years ago
- a bucket of bioinformatics scripts☆13Updated this week
- GTEx analysis scripts☆20Updated 8 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆16Updated 4 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Updated 2 weeks ago
- Scripts for plotting figures and running analysis throughout the manuscript☆11Updated 3 years ago
- SCALLOP-INF analysis☆20Updated this week
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 6 years ago
- ☆13Updated 3 years ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago