leelabsg / SKATLinks
Sequence kernel association test (SKAT)
☆54Updated 4 months ago
Alternatives and similar repositories for SKAT
Users that are interested in SKAT are comparing it to the libraries listed below
Sorting:
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- Development for SAIGE and SAIGE-GENE(+)☆85Updated last month
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated 3 weeks ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆71Updated 3 weeks ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆62Updated 2 months ago
- Fast, integrative fine mapping with functional data☆61Updated 6 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆57Updated 3 months ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆97Updated 10 months ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆52Updated 9 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated 2 years ago
- ☆63Updated 4 years ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆69Updated 9 months ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆89Updated 2 years ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆127Updated last year
- methods for functional summary-based imputation☆91Updated 3 years ago
- Easily download publicly available GWAS summary statistics.☆77Updated 2 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 6 months ago
- A factor analysis package☆104Updated 13 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆52Updated 6 years ago
- Read PLINK BED/BIM/FAM files into R☆44Updated 4 years ago
- ☆40Updated 7 years ago
- Cross-population polygenic prediction☆96Updated last month
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- ☆27Updated 5 years ago
- Software for estimating correlation of trait effect sizes across populations☆53Updated 7 months ago
- Fuji plot—a circos representation of multiple GWAS results—☆92Updated 7 months ago
- Main ricopili repo for public releases☆51Updated 8 months ago
- Functional genomics and genome-wide association studies☆69Updated 7 years ago
- ☆50Updated last week
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆44Updated last year