Sequence kernel association test (SKAT)
☆55Aug 7, 2025Updated last year
Alternatives and similar repositories for SKAT
Users that are interested in SKAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆40Jul 4, 2021Updated 5 years ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆12Jun 10, 2019Updated 7 years ago
- Rare variant test software for next generation sequencing data☆145Jan 26, 2022Updated 4 years ago
- ☆37Feb 19, 2022Updated 4 years ago
- A tool to build a website to browse hundreds or thousands of GWAS.☆199Apr 22, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Various multi-trait association tests in R☆11Oct 30, 2018Updated 8 years ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆107Oct 2, 2026Updated 3 weeks ago
- ☆10Dec 15, 2024Updated last year
- Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release☆395Jun 7, 2023Updated 3 years ago
- R package for the analysis of massive SNP arrays.☆227Jul 10, 2026Updated 3 months ago
- LD Score Regression (LDSC)☆805Jan 16, 2026Updated 9 months ago
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆36Apr 27, 2026Updated 6 months ago
- Toy simulations and analyses of heritability and genetic differences☆11Jul 17, 2024Updated 2 years ago
- R package AssotesteR☆13Dec 18, 2013Updated 12 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Oct 24, 2022Updated 4 years ago
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆270Oct 2, 2026Updated 3 weeks ago
- Phenome Exome Association and Correlation Of Key phenotypes☆36Aug 19, 2021Updated 5 years ago
- GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis☆30Mar 12, 2020Updated 6 years ago
- ☆19Sep 24, 2024Updated 2 years ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆13Jun 11, 2019Updated 7 years ago
- Ultrafast GPU-enabled QTL mapper☆218Jun 29, 2025Updated last year
- R package for RIVER (RNA-Informed Variant Effect on Regulation)☆12Mar 5, 2020Updated 6 years ago
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 11 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Fine-mapping method only using summary statistics☆20Mar 23, 2016Updated 10 years ago
- MetaXcan software and manuscript☆204Sep 9, 2026Updated last month
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆15Sep 2, 2021Updated 5 years ago
- Burden testing against public controls☆51Feb 27, 2024Updated 2 years ago
- locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression☆10Jan 2, 2024Updated 2 years ago
- A new model and algorithm for multivariate Bayesian variable selection regression.☆34Oct 19, 2026Updated last week
- Program to simulate admixture between multiple populations☆19Mar 8, 2023Updated 3 years ago
- Repository for resources we'd like to share with the community.☆27Apr 1, 2022Updated 4 years ago
- A Scientometric Review of Genome Wide Association Studies☆41Jun 30, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 5 years ago
- Simulation and data analysis code for dream paper☆13Jun 5, 2020Updated 6 years ago
- Paper discribing LDpred2☆16Oct 20, 2022Updated 4 years ago
- Interface to various variant calling formats.☆32Apr 10, 2026Updated 6 months ago
- Multivariate Omnibus Statistical Test☆23Jul 2, 2024Updated 2 years ago
- SEEKIN: SEquence-based Estimation of KINship☆15Oct 11, 2017Updated 9 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Oct 2, 2026Updated 3 weeks ago