Alternatives and similar repositories for SKAT

Users that are interested in SKAT are comparing it to the libraries listed below

• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆45Updated last year
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 3 weeks ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 3 weeks ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆63Updated 7 months ago
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆41Updated 3 years ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆22Updated last year
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆65Updated 2 years ago
• clagiamba / moloc
  ☆35Updated 4 years ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆44Updated 3 months ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆58Updated 5 years ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆44Updated this week
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• atgu / hgdp_tgp
  ☆42Updated last week
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆64Updated 2 months ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆40Updated 2 years ago
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆47Updated 2 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆47Updated 2 weeks ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆51Updated 6 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆46Updated last week
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆76Updated last week
• melindacmills / IntroStatisticalGenetics
  GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis
  ☆28Updated 5 years ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆37Updated last week
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆49Updated last month
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆53Updated last year
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆42Updated last year
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆67Updated 6 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆48Updated last month