Tools to work with variant call format files
☆266Feb 23, 2026Updated last month
Alternatives and similar repositories for vcfR
Users that are interested in vcfR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆672Mar 20, 2026Updated 3 weeks ago
- VCF-kit: Assorted utilities for the variant call format☆134Jul 10, 2025Updated 9 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆400Aug 30, 2025Updated 7 months ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆365Jun 6, 2025Updated 10 months ago
- Program for analysing NGS data.☆258Mar 6, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Oct 28, 2025Updated 5 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 2 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- adegenet: a R package for the multivariate analysis of genetic markers☆200Feb 7, 2025Updated last year
- Toolset for SV simulation, comparison and filtering☆415Dec 1, 2023Updated 2 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆50Nov 13, 2023Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆564Jul 13, 2024Updated last year
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆554May 15, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Integrative analysis of structural variations.☆40Dec 20, 2023Updated 2 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆39May 21, 2024Updated last year
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆151Dec 22, 2025Updated 3 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆333Jul 7, 2023Updated 2 years ago
- Structural variant and indel caller for mapped sequencing data☆462Oct 11, 2025Updated 6 months ago
- A Framework for Coalescent Simulation in R☆24Mar 20, 2024Updated 2 years ago
- ☆37Feb 19, 2022Updated 4 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆112Oct 16, 2025Updated 5 months ago
- The next version of bwa-mem☆826Oct 15, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Powerful statistics for VCF files☆73Nov 16, 2025Updated 4 months ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆486Feb 25, 2026Updated last month
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆865Feb 8, 2026Updated 2 months ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆855Apr 7, 2026Updated last week
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Aug 1, 2023Updated 2 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆417Mar 13, 2026Updated last month
- Genome data visualizations☆222Jan 10, 2026Updated 3 months ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆308Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Learning the Variant Call Format☆150Aug 4, 2025Updated 8 months ago
- ☆13Dec 19, 2018Updated 7 years ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 3 years ago
- Genomic VCF to tab-separated values☆48Mar 9, 2023Updated 3 years ago
- QTL mapping with binmap data☆18May 18, 2019Updated 6 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆87Aug 7, 2023Updated 2 years ago
- RADseq Data Exploration, Manipulation and Visualization using R☆60Sep 4, 2025Updated 7 months ago