Alternatives and similar repositories for vcfR:

Users that are interested in vcfR are comparing it to the libraries listed below

• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆308Updated last year
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆259Updated 3 months ago
• YaoLab-Bioinfo / shinyCircos
  an R/shiny application for creation of Circos plot interactively
  ☆157Updated 2 years ago
• thibautjombart / adegenet
  adegenet: a R package for the multivariate analysis of genetic markers
  ☆185Updated 3 months ago
• ropensci / biomartr
  Genomic Data Retrieval with R
  ☆221Updated 3 months ago
• jiabowang / GAPIT
  Genome Association Predict Integrate Tools
  ☆200Updated 3 weeks ago
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆234Updated 3 weeks ago
• TickingClock1992 / RIdeogram
  ☆171Updated 4 years ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆216Updated last month
• stephenturner / qqman
  An R package for creating Q-Q and manhattan plots from GWAS results
  ☆166Updated last year
• omarwagih / ggseqlogo
  Publication-quality sequence logos in R
  ☆212Updated 6 months ago
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆309Updated last year
• wilkox / gggenes
  ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
  ☆540Updated last year
• JoniColeman / gwas_scripts
  Codebook from my GWAS cookbook
  ☆190Updated 2 years ago
• griffithlab / GenVisR
  Genome data visualizations
  ☆217Updated 11 months ago
• mhahsler / rBLAST
  Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
  ☆108Updated 4 months ago
• PF2-pasteur-fr / SARTools
  Statistical Analysis of RNA-Seq Tools
  ☆107Updated last month
• BGI-shenzhen / PopLDdecay
  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
  ☆190Updated 8 months ago
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆183Updated 2 months ago
• pachterlab / sleuth
  Differential analysis of RNA-Seq
  ☆304Updated 9 months ago
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆86Updated 4 years ago
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆265Updated last year
• microbiome / microbiome
  microbiome R package
  ☆299Updated 5 months ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆222Updated last month
• Bioconductor / LearnBioconductor
  Training material for introductory R / Bioconductor courses
  ☆78Updated 2 years ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆248Updated 3 months ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆101Updated 2 months ago
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆253Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆227Updated 4 years ago
• cxli233 / SimpleTidy_GeneCoEx
  A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
  ☆201Updated 9 months ago