stanleyn / Comp790-166-Comp-BioLinks
Computational Biology- Spring 2021
☆48Updated 3 years ago
Alternatives and similar repositories for Comp790-166-Comp-Bio
Users that are interested in Comp790-166-Comp-Bio are comparing it to the libraries listed below
Sorting:
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Geometry-preserving random sampling☆89Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated 2 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆55Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆95Updated 6 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated last month
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated last week
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Scripts for using scanpy☆38Updated last week
- scNMT-seq gastrulation☆42Updated 2 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Population balance analysis☆44Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago
- ☆43Updated 2 years ago
- University of Cambridge PhD thesis☆16Updated 4 years ago
- Topics In Data Science and Bioinformatics☆79Updated last year
- easy access to benchmark datasets☆50Updated 7 years ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆49Updated last week
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆58Updated 3 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- post-clustering differential expression test☆36Updated 6 years ago