stanleyn / Comp790-166-Comp-BioLinks
Computational Biology- Spring 2021
☆48Updated 4 years ago
Alternatives and similar repositories for Comp790-166-Comp-Bio
Users that are interested in Comp790-166-Comp-Bio are comparing it to the libraries listed below
Sorting:
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Updated 5 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- ☆29Updated 2 years ago
- Data and analysis for the Splatter paper☆29Updated 8 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Toolkit for single-cell DNA methylation analysis.☆45Updated 3 weeks ago
- Modelling DNA methylation profiles☆24Updated 5 years ago
- ☆59Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Updated 6 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆43Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 3 months ago
- R package with motifs for use with chromVAR☆28Updated 8 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- ☆55Updated 10 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Supervised Adversarial Alignment of Single-Cell RNA-seq Data☆30Updated 5 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated 2 months ago
- Topics In Data Science and Bioinformatics☆79Updated last year
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago