Computational Biology- Spring 2021
☆50Nov 1, 2021Updated 4 years ago
Alternatives and similar repositories for Comp790-166-Comp-Bio
Users that are interested in Comp790-166-Comp-Bio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆21Apr 9, 2024Updated 2 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- My computational biology course as it evolves in real time☆14Aug 31, 2021Updated 4 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 6 months ago
- Single Cell RNA PolyA Site Discovery☆11Jul 27, 2026Updated 2 weeks ago
- Explore the Hi-Cs☆12Jul 25, 2026Updated 2 weeks ago
- Probabilistic gene expression barcodes for cell type annotation☆27Apr 26, 2022Updated 4 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated last year
- ☆28May 16, 2025Updated last year
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆46Mar 13, 2026Updated 4 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- HPC Python lesson materials☆62Jan 20, 2023Updated 3 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Mar 14, 2019Updated 7 years ago
- Scientific Computing in Python, a practical and ultimate tutorials☆14Mar 7, 2023Updated 3 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆39Aug 5, 2026Updated last week
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆56Jan 20, 2025Updated last year
- A cheat sheet for Bioinformatians.☆11Aug 9, 2017Updated 9 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆28Nov 7, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆26Jul 17, 2026Updated 3 weeks ago
- ☆18Oct 17, 2023Updated 2 years ago
- dalmatian is a collection of high-level companion functions for Firecloud and FISS.☆20Aug 3, 2026Updated last week
- Undergraduate course of Introduction of Computational Biology☆17Jul 28, 2026Updated 2 weeks ago
- Cooler demo using a Jupyter notebook Binder☆20Sep 24, 2020Updated 5 years ago
- ☆58Aug 11, 2022Updated 4 years ago
- Count HLA alleles in single-cell RNA-seq data☆64Nov 5, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 4 months ago
- An R package built on RMarkdown to create biosketches (e.g. for NIH)☆22Feb 25, 2022Updated 4 years ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆122May 28, 2020Updated 6 years ago
- Introduction to Reproducible Publications with Quarto☆18Updated this week
- Deep learning model to predict degron sequences☆19Feb 24, 2023Updated 3 years ago
- Materials for Principles of Data Science BIOS 611☆16Nov 28, 2023Updated 2 years ago
- TCR and BCR assembly from RNA-seq data☆359Aug 3, 2026Updated last week