Alternatives and similar repositories for Comp790-166-Comp-Bio

Users that are interested in Comp790-166-Comp-Bio are comparing it to the libraries listed below

• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆52Updated 3 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 weeks ago
• YosefLab / scone
  ☆55Updated 11 months ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆95Updated last year
• rargelaguet / thesis
  University of Cambridge PhD thesis
  ☆16Updated 5 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆45Updated last year
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆29Updated 8 years ago
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated 2 years ago
• SchulzLab / TEPIC
  Annotation of genomic regions using transcription factor binding sites and epigenetic data
  ☆41Updated 3 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆76Updated 4 months ago
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆79Updated last year
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆46Updated 2 years ago
• LuyiTian / sc_mixology
  This contains the dataset for comparing scRNA-seq analysis methods
  ☆91Updated 5 years ago
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆44Updated 5 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆74Updated 3 years ago
• hemberg-lab / scfind
  ☆43Updated 2 years ago
• cole-trapnell-lab / cicero-release
  ☆59Updated last year
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆98Updated 6 years ago
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆64Updated last year
• bioFAM / slalom
  ☆29Updated 3 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 4 years ago
• qinqian / lisa
  epigenome analysis to rank transcription factors
  ☆33Updated 3 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• kieranrcampbell / clonealign
  Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
  ☆36Updated 5 years ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated 2 years ago
• cellatlas / human
  ☆44Updated last year
• aertslab / CREsted
  CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…
  ☆57Updated last week
• ebi-gene-expression-group / scanpy-scripts
  Scripts for using scanpy
  ☆39Updated 3 months ago