tools and notes for long reads analysis
☆24Mar 31, 2025Updated last year
Alternatives and similar repositories for awesome-long-reads
Users that are interested in awesome-long-reads are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bioinformatics one-liner for 100 days☆49Apr 9, 2024Updated 2 years ago
- ☆14Mar 7, 2024Updated 2 years ago
- ☆26Aug 10, 2023Updated 3 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- ☆93Dec 1, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆27Aug 18, 2026Updated last month
- published papers with a lot of data☆76Apr 5, 2025Updated last year
- RNAseq pipeline based on snakemake☆27Mar 8, 2023Updated 3 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- This is a project aims to help Chinese student apply compbio PhD program☆27May 28, 2022Updated 4 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- My Bash notes☆12Sep 28, 2026Updated last week
- ☆13Jan 29, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 6 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- ☆11Jan 29, 2025Updated last year
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 10 months ago
- An experimental AI agent workflow.☆17Oct 11, 2025Updated 11 months ago
- The Monod package fits CME models to sequencing data.☆37Apr 24, 2026Updated 5 months ago
- SlideJ: an ImageJ plugin for WSI processing☆17Nov 7, 2019Updated 6 years ago
- Single Cell Analysis of Five'Ends☆54Mar 19, 2024Updated 2 years ago
- R Port of psmc☆16Mar 16, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequenci…☆12Apr 5, 2026Updated 6 months ago
- MPH is a C++ program for fast REML estimation of genetic (co)variance components.☆15Jan 5, 2026Updated 9 months ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Updated this week
- ☆12Jun 12, 2019Updated 7 years ago
- Compgen Course 2025, Module 3 Course Material, Multi-omics integration using deep learning☆65Jun 3, 2026Updated 4 months ago
- Tidying and visualizing for animal pedigrees☆22Sep 23, 2026Updated 2 weeks ago
- ☆21May 8, 2026Updated 5 months ago
- ☆12Aug 8, 2024Updated 2 years ago
- ☆12Sep 4, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Primer design from single genes to whole gene families for unlocking the tree of life☆16May 14, 2026Updated 4 months ago
- Rust-based sra-tools☆77Oct 2, 2026Updated last week
- ☆35Sep 8, 2026Updated last month
- A library of "Micro Agents" that make it easy to add reliable intelligence to any application.☆13Sep 22, 2026Updated 2 weeks ago
- A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).☆36Jul 21, 2026Updated 2 months ago
- 单细胞测序的高级教程☆13Apr 12, 2021Updated 5 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆12Jun 17, 2026Updated 3 months ago