crazyhottommy / awesome-long-reads
tools and notes for long reads analysis
☆21Updated 3 weeks ago
Alternatives and similar repositories for awesome-long-reads:
Users that are interested in awesome-long-reads are comparing it to the libraries listed below
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated 11 months ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆57Updated 4 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated last week
- Genomic coordinates of problematic genomic regions as GRanges☆37Updated 4 months ago
- ☆27Updated last year
- workshop website on readthedocs☆19Updated 2 months ago
- An R interface to the MEME Suite☆50Updated 6 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated 3 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated last month
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆28Updated 2 months ago
- Workshop • Analysis of RNA-seq data☆35Updated last year
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆26Updated 4 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Motif manipulation functions for R.☆28Updated this week
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Bioinformatics one-liner for 100 days☆47Updated last year
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆56Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆34Updated last week
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- ☆10Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 3 months ago
- An R package to time somatic mutations☆61Updated 4 years ago
- ☆30Updated 6 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆45Updated last month