crazyhottommy / awesome-long-readsLinks
tools and notes for long reads analysis
☆24Updated 5 months ago
Alternatives and similar repositories for awesome-long-reads
Users that are interested in awesome-long-reads are comparing it to the libraries listed below
Sorting:
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- A rust framework to make using alevin-fry even simpler☆58Updated 4 months ago
- SingleCell Nanopore sequencing data analysis☆61Updated 3 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 6 months ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆24Updated this week
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆29Updated 9 months ago
- Ultraperformant reimplementation of SICER☆57Updated 4 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆48Updated 3 weeks ago
- ☆11Updated 3 weeks ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 months ago
- Detecting Regulatory Elements using GRO-seq and PRO-seq☆38Updated 4 months ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆87Updated 8 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- ☆50Updated 4 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 4 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆59Updated 3 months ago
- An R interface to the MEME Suite☆52Updated 3 months ago
- Genomic coordinates of problematic genomic regions as GRanges☆42Updated last month
- ☆73Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 9 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆70Updated 4 months ago
- ☆25Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 4 years ago