crazyhottommy / awesome-long-reads

Related projects ⓘ

Alternatives and complementary repositories for awesome-long-reads

• Novartis / easyTrackHubs
  This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…
  ☆28Updated 6 months ago
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆31Updated 6 years ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆52Updated 3 weeks ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated 11 months ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆27Updated last year
• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆53Updated 4 months ago
• crazyhottommy / oneliner_100day_challenge
  Bioinformatics one-liner for 100 days
  ☆43Updated 7 months ago
• meyer-lab-cshl / R-data-visualisation-course
  ☆9Updated 4 years ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆50Updated 3 months ago
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆19Updated last week
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆41Updated last month
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆19Updated 11 months ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated 7 months ago
• massonix / code_snippets
  A collection of code snippets for different tasks
  ☆9Updated last year
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆33Updated last year
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆85Updated 3 months ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆32Updated 3 years ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆27Updated last month
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆26Updated 2 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆57Updated 8 months ago
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆28Updated 11 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆41Updated 2 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆46Updated last month
• js2264 / tidyCoverage
  ☆20Updated 2 months ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆36Updated 2 years ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆25Updated 9 months ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 2 weeks ago
• ShixiangWang / sigflow
  Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
  ☆26Updated last month
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆53Updated 3 years ago