crazyhottommy / awesome-long-reads
tools and notes for long reads analysis
☆21Updated last year
Alternatives and similar repositories for awesome-long-reads:
Users that are interested in awesome-long-reads are comparing it to the libraries listed below
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 3 weeks ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated 11 months ago
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- Bioinformatics one-liner for 100 days☆46Updated 11 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆52Updated 2 months ago
- workshop website on readthedocs☆19Updated last month
- Differential ATAC-seq toolkit☆27Updated last year
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Motif manipulation functions for R.☆28Updated 4 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- An R interface to the MEME Suite☆50Updated 5 months ago
- ☆21Updated 3 months ago
- Somatic point mutation caller☆28Updated 3 months ago
- ☆12Updated last month
- ☆26Updated 11 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 2 weeks ago
- 🧬 Gene analysis toolkit based on R☆56Updated 2 months ago
- Snakemake pipeline for running MAJIQ☆20Updated last year
- Genomic data interpretation and visualization Workshop☆19Updated last year
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last week
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated 2 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated 11 months ago
- Benchmarking long-read RNA-seq analysis tools☆26Updated last month
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆26Updated 3 months ago