Alternatives and similar repositories for tidy-genomics-talk

Users that are interested in tidy-genomics-talk are comparing it to the libraries listed below

• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆46Updated this week
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• carpentries-incubator / bioc-project
  Introduction to the Bioconductor project
  ☆18Updated last month
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated 2 months ago
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆27Updated 3 weeks ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated this week
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• Bioconductor / SummarizedExperiment
  A container (S4 class) for matrix-like assays
  ☆36Updated last month
• tidyomics / tidySummarizedExperiment
  Brings SummarizedExperiment to the tidyverse
  ☆29Updated last month
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆38Updated last month
• carpentries-incubator / bioc-rnaseq
  Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
  ☆25Updated last week
• gosling-lang / grosling
  R interface to 'Gos'
  ☆39Updated 2 years ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆31Updated last week
• MonashBioinformaticsPlatform / varistran
  R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data
  ☆21Updated 6 months ago
• Bioconductor / BiocWorkshops
  2018 Bioconductor Workshops
  ☆76Updated 6 years ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆36Updated 3 months ago
• tgirke / systemPipeR
  Project Website:
  ☆54Updated 5 months ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆30Updated 11 months ago
• tidyomics / tidyomicsBlog_ARCHIVE
  The blog of tidyomics
  ☆14Updated 4 months ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆24Updated 5 months ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆79Updated last week
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆14Updated last year
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 5 years ago
• waldronlab / ProjectAsPackage
  Demonstration of the use of an R package to organize a data analysis project
  ☆22Updated 5 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated last year
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆69Updated 2 weeks ago
• waldronlab / enrichOmics
  Functional enrichment analysis of high-throughput omics data
  ☆20Updated 11 months ago
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆31Updated 5 years ago