shchurch / countlandLinks
tools in python and R for analyzing biological count data, especially from single cell RNAseq
☆22Updated last year
Alternatives and similar repositories for countland
Users that are interested in countland are comparing it to the libraries listed below
Sorting:
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 2 months ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆27Updated 3 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 5 years ago
- Differential expression and allelic analysis, nonparametric statistics☆30Updated last year
- Pairwise Hierarchical Model☆20Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- ☆28Updated last year
- interactive plots for differential expression analysis☆34Updated 7 months ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- scover☆24Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated last month
- A small R package to make sequencing read coverage plots in R.☆40Updated 3 weeks ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated 2 months ago
- Explore the cancer relevance of your gene list☆52Updated last month
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Gene-level general linear mixed model☆24Updated 3 months ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Updated 3 months ago
- Scripts to install as a Bioconda package for making workflows☆18Updated last year
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated last year
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Updated last month
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Updated 2 years ago
- Exon-Intron Split Analysis (EISA) in R☆17Updated 2 months ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆20Updated last year