shchurch / countland
tools in python and R for analyzing biological count data, especially from single cell RNAseq
☆21Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for countland
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆26Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Pairwise Hierarchical Model☆13Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- R package for Flexible dot plots☆26Updated 2 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆17Updated 3 weeks ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆14Updated 3 weeks ago
- ☆10Updated 5 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆21Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- interactive plots for differential expression analysis☆25Updated 2 months ago
- scover☆22Updated last year
- Converts 'MultiQC' Reports into Tidy Data Frames☆14Updated 7 months ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆19Updated 4 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 3 years ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆15Updated 6 months ago
- ☆23Updated 2 months ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated last year
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Updated 5 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated 3 years ago
- ☆16Updated 2 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 5 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 5 months ago
- A tidy interface for coverage analysis☆24Updated 4 years ago