Alternatives and similar repositories for countland

Users that are interested in countland are comparing it to the libraries listed below

• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆27Updated 3 months ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated 3 weeks ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated 3 months ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated last year
• cziegenhain / UMIcountR
  ☆16Updated 3 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 11 months ago
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆19Updated 3 years ago
• jsalignon / cactus
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆16Updated 8 months ago
• jacobhepkema / scover
  scover
  ☆23Updated last year
• jtleek / sva-devel
  ☆29Updated 11 months ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆22Updated 5 months ago
• davemcg / awesome_genome_browsers
  ☆10Updated 6 years ago
• MonashBioinformaticsPlatform / varistran
  R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data
  ☆21Updated last month
• caravagnalab / CNAqc
  CNAqc - Copy Number Alteration (CNA) Quality Check package
  ☆22Updated last month
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 3 years ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated 2 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆68Updated 3 weeks ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 3 years ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆28Updated 3 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆18Updated last year
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• SimoneTiberi / DifferentialRegulation
  ☆11Updated 10 months ago
• crazyhottommy / single-cell-DNAseq-notes
  ☆16Updated 2 years ago
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• AlexandrovLab / SigProfilerMatrixGeneratorR
  R wrapper for utilizing the SigProfilerMatrixGenerator framework
  ☆20Updated 2 years ago
• stephenslab / fastglmpca
  Fast algorithms for GLM-PCA.
  ☆14Updated 4 months ago