shchurch / countland
tools in python and R for analyzing biological count data, especially from single cell RNAseq
☆22Updated last year
Alternatives and similar repositories for countland:
Users that are interested in countland are comparing it to the libraries listed below
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated last year
- scover☆23Updated last year
- ☆16Updated 2 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆21Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Updated 9 months ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 months ago
- ☆10Updated 5 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated last week
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆20Updated 2 weeks ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated last year
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Gene-level general linear mixed model☆20Updated 2 months ago
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- Create QC and summary reports for Alevin output☆32Updated 3 months ago
- interactive plots for differential expression analysis☆32Updated last month
- Pairwise Hierarchical Model☆17Updated 3 years ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆10Updated 5 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- Code for EpiMap data browser☆14Updated 9 months ago
- kallisto index tag extractor☆20Updated 5 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆21Updated 4 years ago
- A tidy interface for coverage analysis☆24Updated 5 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 4 months ago