jingxinfu / TIDEpy
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
☆34Updated 2 years ago
Alternatives and similar repositories for TIDEpy:
Users that are interested in TIDEpy are comparing it to the libraries listed below
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 3 years ago
- ☆29Updated 6 years ago
- ☆54Updated last year
- SPATA Package for spatial gene expression analysis☆21Updated 2 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆43Updated last month
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 7 months ago
- scWGCNA☆56Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆32Updated 4 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- ☆20Updated 4 years ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆36Updated 2 months ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆59Updated last month
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- ☆46Updated last year
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 10 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated this week
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆39Updated 5 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆28Updated 5 years ago
- ☆47Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 11 months ago
- ☆60Updated 4 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆52Updated 2 years ago
- ☆39Updated 3 years ago
- ☆40Updated 6 years ago