jingxinfu / TIDEpyLinks
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
☆35Updated 3 years ago
Alternatives and similar repositories for TIDEpy
Users that are interested in TIDEpy are comparing it to the libraries listed below
Sorting:
- scWGCNA☆61Updated 3 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 4 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- ☆61Updated last year
- ☆53Updated 2 years ago
- ☆30Updated 7 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 6 years ago
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- ☆47Updated 11 months ago
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- Identifying tumor cells at the single-cell level using machine learning☆49Updated last year
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆59Updated last year
- ☆61Updated 4 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆41Updated 6 months ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- A portable and fast single cell type identifier☆64Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆44Updated 3 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 3 weeks ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- ☆25Updated 4 months ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆46Updated 11 months ago