TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
☆47Mar 13, 2026Updated 7 months ago
Alternatives and similar repositories for TIDEpy
Users that are interested in TIDEpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Dec 15, 2019Updated 6 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆23May 21, 2024Updated 2 years ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆33Nov 9, 2022Updated 3 years ago
- ☆16May 8, 2023Updated 3 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 3 years ago
- R package☆22Dec 16, 2023Updated 2 years ago
- ☆16Feb 11, 2024Updated 2 years ago
- ☆14Jun 11, 2023Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 7 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆53Jan 21, 2026Updated 8 months ago
- OncoNetExplainer: Explainable Prediction of Cancer Types Based on Gene Expression Data☆11Feb 28, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆553Aug 3, 2026Updated 2 months ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆28Nov 7, 2025Updated 11 months ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Aug 6, 2019Updated 7 years ago
- Library and tool for annotating MAF files using Genome Nexus Webserver API☆13Aug 11, 2026Updated 2 months ago
- Deep Learning Based Tumor Type Classification Using Gene Expression Data☆26Sep 17, 2024Updated 2 years ago
- Repository for Cibersortx☆63Mar 18, 2021Updated 5 years ago
- ☆13Jun 6, 2024Updated 2 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆67Apr 14, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆296Jul 23, 2026Updated 2 months ago
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆20Oct 6, 2026Updated last week
- ☆46Jul 14, 2023Updated 3 years ago
- ☆17Sep 28, 2022Updated 4 years ago
- Computational Biology- Spring 2021☆50Nov 1, 2021Updated 4 years ago
- Provides classes for working with sets☆11Dec 19, 2025Updated 9 months ago
- ☆16Apr 18, 2025Updated last year
- ☆92Apr 5, 2021Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Jan 6, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- An evolutionary Algorithm for the Identification and Study of Prognostic Gene Expression Signatures in Cancer (Bioconductor)☆15Oct 24, 2020Updated 5 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51Updated this week
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- published papers with a lot of data☆76Apr 5, 2025Updated last year
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago