jingxinfu / TIDEpyLinks
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
☆35Updated 2 years ago
Alternatives and similar repositories for TIDEpy
Users that are interested in TIDEpy are comparing it to the libraries listed below
Sorting:
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- ☆58Updated last year
- ☆30Updated 7 years ago
- scWGCNA☆61Updated 2 years ago
- A portable and fast single cell type identifier☆64Updated 4 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆56Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last week
- ☆52Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- ☆47Updated 7 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆43Updated last month
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 4 years ago
- a fully Bayesian approach to deconvolve tumor microenvironment☆60Updated 3 years ago
- ☆63Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Unified access to several second-generation deconvolution methods☆73Updated this week
- Single-cell Lung Cancer Atlas with 1.2M cells☆65Updated 6 months ago
- ☆47Updated last year
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- ☆59Updated 3 years ago