jingxinfu / TIDEpy
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
☆32Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for TIDEpy
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 3 years ago
- ☆29Updated 6 years ago
- ☆53Updated 10 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆51Updated 2 years ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- ☆47Updated last year
- SPATA Package for spatial gene expression analysis☆21Updated 2 years ago
- SCDC☆42Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- ☆16Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆21Updated 6 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆43Updated 7 months ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆36Updated 2 years ago
- scWGCNA☆55Updated 2 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated last year
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆19Updated 4 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆39Updated this week
- ☆37Updated 10 months ago
- ☆48Updated 4 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆59Updated last year
- ☆40Updated 6 years ago
- Standalone shiny server container for viewing CellChat object☆12Updated 3 years ago
- ☆15Updated 3 years ago