Deep Learning Method to Identify Cancer Associated TCRs
☆46Aug 2, 2022Updated 4 years ago
Alternatives and similar repositories for DeepCAT
Users that are interested in DeepCAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Highly specific clustering of T cell receptor CDR3s☆43Jun 21, 2022Updated 4 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 4 years ago
- ☆41Aug 18, 2020Updated 6 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆61May 4, 2022Updated 4 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆124Sep 16, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆15Sep 21, 2021Updated 5 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 26, 2020Updated 6 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- Comparative evaluation of different methods for TCR clustering☆12Aug 28, 2018Updated 8 years ago
- cfDNA analysis workflow☆23Jun 15, 2023Updated 3 years ago
- TCR and BCR assembly from RNA-seq data☆367Sep 25, 2026Updated last month
- DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning☆131Sep 12, 2023Updated 3 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 5 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆57Apr 3, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Sep 28, 2022Updated 4 years ago
- Computational Biology- Spring 2021☆50Nov 1, 2021Updated 4 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆93Jun 14, 2022Updated 4 years ago
- flexible CDR based distance metrics☆76Dec 16, 2025Updated 10 months ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Mar 14, 2019Updated 7 years ago
- predicting peptide and TCR interaction☆19Jan 27, 2021Updated 5 years ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆76Updated this week
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆78Oct 16, 2024Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15May 17, 2022Updated 4 years ago
- JAX translation of BoltzGen☆12Nov 11, 2025Updated 11 months ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆23Feb 1, 2024Updated 2 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆24Oct 31, 2017Updated 9 years ago
- ACTIONet single-cell analysis framework☆47Aug 28, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for the identification of functionally important subnetworks☆14May 6, 2024Updated 2 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆19Jan 2, 2024Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆36Apr 1, 2022Updated 4 years ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated last month
- ☆13Jul 26, 2026Updated 3 months ago