Deep Learning Method to Identify Cancer Associated TCRs
β46Aug 2, 2022Updated 3 years ago
Alternatives and similar repositories for DeepCAT
Users that are interested in DeepCAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Highly specific clustering of T cell receptor CDR3sβ43Jun 21, 2022Updated 3 years ago
- π§ Deep generative models for TCR sequences π§β17Apr 4, 2022Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.β59May 4, 2022Updated 3 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) sheddingβ13Jan 8, 2021Updated 5 years ago
- β41Aug 18, 2020Updated 5 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.β19Aug 26, 2020Updated 5 years ago
- π [Paper/Tutorial] T-cell repertoire annotation and motif discoveryβ14Sep 15, 2025Updated 6 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Dataβ122Sep 16, 2025Updated 6 months ago
- β17Sep 28, 2022Updated 3 years ago
- β17Jun 24, 2021Updated 4 years ago
- Comparative evaluation of different methods for TCR clusteringβ12Aug 28, 2018Updated 7 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offerβ¦β55Apr 3, 2024Updated last year
- TCR and BCR assembly from RNA-seq dataβ343Mar 14, 2026Updated last week
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)β87Oct 6, 2021Updated 4 years ago
- DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learningβ125Sep 12, 2023Updated 2 years ago
- Calculation of distance metrics for matricesβ26Mar 1, 2019Updated 7 years ago
- predicting peptide and TCR interactionβ20Jan 27, 2021Updated 5 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.β74Mar 15, 2026Updated last week
- Efficiently compute robust markers across single-cell datasetsβ12Apr 21, 2021Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.β16Dec 8, 2021Updated 4 years ago
- SpatialCorr: Identify gene sets with spatially varying correlationβ18Jan 2, 2024Updated 2 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseqβ22Feb 1, 2024Updated 2 years ago
- Ultrafast TCR clustering algorithm based on geometric isometryβ74Oct 16, 2024Updated last year
- cfDNA analysis workflowβ23Jun 15, 2023Updated 2 years ago
- This is the repository which contains the code that was used to generate the results and figures of the βSingle-cell RNA-sequencing reveaβ¦β13Jun 21, 2024Updated last year
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigenβ90Jun 14, 2022Updated 3 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysisβ24Oct 31, 2017Updated 8 years ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learningβ17Apr 22, 2024Updated last year
- flexible CDR based distance metricsβ71Dec 16, 2025Updated 3 months ago
- Blood Transcription Modules for interpreting blood transcriptomics dataβ11Nov 25, 2024Updated last year
- π½Freedom of Press Indexβ11Mar 14, 2020Updated 6 years ago
- HOT regions paperβ11Jun 18, 2019Updated 6 years ago
- post-clustering differential expression testβ36May 28, 2019Updated 6 years ago
- R package for the identification of functionally important subnetworksβ14May 6, 2024Updated last year
- Differential Correlation across Ranked Samplesβ12May 31, 2023Updated 2 years ago
- A pipeline to identify gene family using mutiple tools and scripts.β11Aug 22, 2021Updated 4 years ago
- Computational Biology- Spring 2021β48Nov 1, 2021Updated 4 years ago
- β14Aug 3, 2022Updated 3 years ago
- Overview of the machine learning project and various sub-tasks.β10Updated this week