simonvh / bioinfosummerLinks
Tutorial for AMSI BioInfoSummer 2018
☆30Updated 7 years ago
Alternatives and similar repositories for bioinfosummer
Users that are interested in bioinfosummer are comparing it to the libraries listed below
Sorting:
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 5 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- Tutorial Website☆61Updated 4 years ago
- Links to ATAC-seq analysis tools☆74Updated 4 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- DNA methylation analysis notes from Ming Tang☆92Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated last week
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆56Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- ☆63Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- ATAC-seq Quality Control☆25Updated last month
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆88Updated 11 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 11 months ago
- R package of colors for the Buenrostro Lab☆86Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆74Updated last month
- Analysis pipeline for ATAC-seq Data☆62Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year