ngs-docs / 2021-GGG298Links
Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis
☆12Updated 4 years ago
Alternatives and similar repositories for 2021-GGG298
Users that are interested in 2021-GGG298 are comparing it to the libraries listed below
Sorting:
- ☆20Updated last month
- ☆16Updated last week
- End-guided RNA assembler☆15Updated 2 months ago
- k-mer similarity analysis pipeline☆21Updated 3 weeks ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 8 months ago
- Annotating principal splice isoforms☆14Updated 8 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Comprehensive and scalable differential splicing analyses☆17Updated 3 months ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated this week
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last month
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆9Updated 7 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated 2 years ago
- ☆18Updated 5 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Calculate and plot distributions of genomic ranges☆26Updated 2 months ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- ☆22Updated last month
- interactive plots for differential expression analysis☆32Updated last week
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Comprehensive Human Expressed SequenceS☆17Updated 10 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- ☆12Updated last year
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated last week
- alternative splicing analysis pipeline☆19Updated 4 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago