AstraZeneca-NGS / disambiguate
Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
☆31Updated 6 years ago
Alternatives and similar repositories for disambiguate:
Users that are interested in disambiguate are comparing it to the libraries listed below
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- ☆13Updated 7 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- An R package for predicting HR deficiency from mutation contexts☆28Updated 2 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 6 months ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆33Updated 5 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated this week
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- ☆38Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 3 weeks ago
- ☆33Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆68Updated 2 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 weeks ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated 2 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last week
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago