dkoslicki / MinHashMetagenomicsLinks
Fast approximation of similarity for sets of very different sizes
☆20Updated 3 years ago
Alternatives and similar repositories for MinHashMetagenomics
Users that are interested in MinHashMetagenomics are comparing it to the libraries listed below
Sorting:
- Fast and accurate set similarity estimation via containment min hash☆42Updated last year
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated this week
- ☆13Updated 9 years ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆69Updated 4 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- ☆10Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- ☆18Updated last year
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 3 years ago
- Efficient, parallel compression for terabyte-scale data☆52Updated 2 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Updated 2 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- ☆12Updated 6 years ago
- ☆24Updated 4 years ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 8 months ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- ☆14Updated 2 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Sketch-based surveillance platform☆13Updated 11 months ago
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Updated 2 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆55Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- ☆28Updated 7 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated last week