Alternatives and similar repositories for MinHashMetagenomics

Users that are interested in MinHashMetagenomics are comparing it to the libraries listed below

• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆50Updated this week
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• Malfoy / PAC
  ☆10Updated last year
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆21Updated last year
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 11 months ago
• Kingsford-Group / remuval
  ☆12Updated 5 years ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆56Updated last year
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆40Updated 3 months ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• lh3 / partig
  An experimental tool to estimate the similarity between all pairs of contigs
  ☆35Updated 4 years ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• Kingsford-Group / splitsbt
  ☆18Updated 6 years ago
• marbl / MetaCarvel
  MetaCarvel: A scaffolder for metagenomes
  ☆14Updated 7 months ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆18Updated 3 years ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• cartoonist / psi
  Pan-genome Seed Index
  ☆20Updated 2 months ago
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆70Updated last year
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆42Updated last week
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 3 years ago
• zhaoxiaofei / bindash
  Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
  ☆59Updated last year
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆45Updated 7 months ago
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆12Updated last year
• TavorB / spectral_jaccard_similarity
  ☆14Updated 2 years ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 3 months ago
• dkoslicki / CMash
  Fast and accurate set similarity estimation via containment min hash
  ☆42Updated 9 months ago