cosmo-team / cosmoLinks
Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
☆53Updated last year
Alternatives and similar repositories for cosmo
Users that are interested in cosmo are comparing it to the libraries listed below
Sorting:
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 9 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Substring index for paths in a graph☆60Updated this week
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 8 months ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- A succinct colored dBG representation☆12Updated 7 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- De Bruijn graph representation in low memory☆35Updated last year
- REINDEER REad Index for abuNDancE quERy☆56Updated 4 months ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- reference free variant assembly☆34Updated 2 years ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆64Updated 9 months ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 8 months ago
- Adaptive semi-global banded alignment on string graphs☆67Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- An Oxford Nanopore Basecaller☆70Updated 4 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- High-level API for storing and querying sequence variant data☆20Updated 6 years ago
- a string to graph aligner☆41Updated 9 years ago
- my PhD thesis☆36Updated 6 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago