cosmo-team / cosmoLinks
Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
☆53Updated last year
Alternatives and similar repositories for cosmo
Users that are interested in cosmo are comparing it to the libraries listed below
Sorting:
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated last month
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- A succinct colored dBG representation☆12Updated 7 years ago
- Substring index for paths in a graph☆60Updated 3 weeks ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Updated 10 months ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- An Oxford Nanopore Basecaller☆70Updated 4 years ago
- tools for error correction and working with long read data☆44Updated 11 years ago
- a string to graph aligner☆41Updated 9 years ago
- De Bruijn graph representation in low memory☆35Updated last year
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- ☆73Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- BWT-based index for graphs☆73Updated 9 months ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆65Updated 10 months ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆33Updated 5 years ago
- High-level API for storing and querying sequence variant data☆20Updated 6 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 3 years ago
- reference free variant assembly☆34Updated 2 years ago