Alternatives and similar repositories for cosmo:

Users that are interested in cosmo are comparing it to the libraries listed below

• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆56Updated last year
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 2 years ago
• ythuang0522 / StriDe
  StriDe Assembler
  ☆25Updated 7 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• VGP / vgp-tools
  ☆28Updated last year
• jasperlinthorst / reveal
  Graph based multi genome aligner
  ☆47Updated 3 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆78Updated last year
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated 2 years ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 3 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated last month
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆57Updated 8 months ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆40Updated 2 months ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 4 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆37Updated last year
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆49Updated last month
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated 8 months ago
• csiro-crop-informatics / biokanga
  An integrated high performance bioinformatics toolkit
  ☆23Updated 5 years ago
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆30Updated 2 years ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated 3 weeks ago
• mklarqvist / tachyon
  High-level API for storing and querying sequence variant data
  ☆20Updated 5 years ago
• HKU-BAL / MegaGTA
  HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
  ☆17Updated 8 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 3 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated last year
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 2 years ago
• marbl / MUMmer3
  MUMmer3
  ☆17Updated 3 years ago
• dahak-metagenomics / dahak
  benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
  ☆21Updated 6 years ago