cosmo-team / cosmoLinks
Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
☆52Updated last year
Alternatives and similar repositories for cosmo
Users that are interested in cosmo are comparing it to the libraries listed below
Sorting:
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 6 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 5 months ago
- A succinct colored dBG representation☆12Updated 6 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 3 weeks ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Substring index for paths in a graph☆60Updated 3 months ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- De Bruijn graph representation in low memory☆36Updated last year
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Index kmtricks bf matrices☆45Updated 8 months ago
- Histosketching Using Little Kmers☆57Updated 2 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- my PhD thesis☆36Updated 6 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- a string to graph aligner☆41Updated 9 years ago
- ☆28Updated 3 months ago
- reference free variant assembly☆33Updated 2 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Updated 6 years ago