Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
☆53Mar 12, 2024Updated 2 years ago
Alternatives and similar repositories for cosmo
Users that are interested in cosmo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 9 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Nov 27, 2025Updated 11 months ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆227Aug 11, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆67Feb 1, 2025Updated last year
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- Relative data structures based on the BWT☆12Apr 28, 2018Updated 8 years ago
- compacted de Bruijn graph construction in low memory☆102Nov 4, 2025Updated 11 months ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- BWT-based index for graphs☆72Aug 19, 2026Updated 2 months ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆18Oct 26, 2025Updated last year
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆18Oct 3, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆56May 17, 2022Updated 4 years ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 9 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 9 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- De novo genome assembly and multisample variant calling☆113Mar 28, 2019Updated 7 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 13 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆19May 21, 2017Updated 9 years ago
- High-performance error correction for Illumina resequencing data☆75May 31, 2016Updated 10 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 3 years ago
- compressed, queryable variation graphs☆11Jun 25, 2015Updated 11 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- FM-index representation of a de Bruijn graph☆27Aug 7, 2017Updated 9 years ago
- Estimating k-mer coverage histogram of genomics data☆80Mar 13, 2026Updated 7 months ago
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Incremental construction of FM-index for DNA sequences☆72Jun 12, 2024Updated 2 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- Classify sequencing reads using MinHash.☆47Apr 6, 2020Updated 6 years ago
- ☆18Jul 9, 2018Updated 8 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆38Oct 1, 2026Updated last month
- Population-scale detection of novel sequence insertions☆28Aug 16, 2022Updated 4 years ago