svm-zhang / AGOUTILinks
Annotated Genome Optimization Using Transcriptome Information
☆20Updated 5 years ago
Alternatives and similar repositories for AGOUTI
Users that are interested in AGOUTI are comparing it to the libraries listed below
Sorting:
- Improved Phased Assembler☆28Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- genomic alignment similarity search tool☆18Updated last month
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- ☆26Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- Visualising discordant reads☆15Updated 9 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Find Unique genomic Regions☆30Updated 2 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- ☆32Updated 4 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆15Updated 4 years ago