Annotated Genome Optimization Using Transcriptome Information
☆20May 31, 2020Updated 5 years ago
Alternatives and similar repositories for AGOUTI
Users that are interested in AGOUTI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Haploidy and Size Completeness Estimation☆14Apr 11, 2024Updated last year
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 7 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- GeneValidator: Identify problems with predicted genes☆49Mar 1, 2024Updated 2 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 5 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22May 29, 2018Updated 7 years ago
- Merge transcriptome assemblies☆31Oct 6, 2016Updated 9 years ago
- a broadly applicable tool for automated gene identification and retrieval☆41Feb 22, 2026Updated last month
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 2 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Sep 5, 2017Updated 8 years ago
- Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI☆24Sep 3, 2014Updated 11 years ago
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- The Simple Fool's Guide to population genomics using RNA-Seq☆28Jul 8, 2016Updated 9 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 11 years ago
- fastq quality assessment and filtering tool☆18Dec 10, 2022Updated 3 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Mar 10, 2026Updated 2 weeks ago
- ☆26Feb 24, 2026Updated last month
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- Better Alignments with Translated HMMER☆25Mar 10, 2026Updated 2 weeks ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 11 years ago
- ☆10Mar 4, 2025Updated last year
- Scripts for homology and orthology assessment from genomic sequences.☆19Oct 5, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- long-read depth breaking☆11Apr 19, 2018Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated last year
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 8 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆38Sep 14, 2025Updated 6 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Mar 22, 2021Updated 5 years ago