Annotated Genome Optimization Using Transcriptome Information
☆20May 31, 2020Updated 6 years ago
Alternatives and similar repositories for AGOUTI
Users that are interested in AGOUTI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Haploidy and Size Completeness Estimation☆14Apr 11, 2024Updated 2 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Transcript to Genome Consistency Network☆16Jun 19, 2012Updated 14 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- GeneValidator: Identify problems with predicted genes☆49Mar 1, 2024Updated 2 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 8 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 6 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆23May 29, 2018Updated 8 years ago
- Merge transcriptome assemblies☆30Oct 6, 2016Updated 9 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆32Apr 23, 2023Updated 3 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆60Sep 5, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- The Simple Fool's Guide to population genomics using RNA-Seq☆28Jul 8, 2016Updated 10 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 3 years ago
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 9 years ago
- ☆11Mar 4, 2025Updated last year
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 11 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆25Feb 24, 2026Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- Scripts for homology and orthology assessment from genomic sequences.☆19Oct 5, 2020Updated 5 years ago
- Better Alignments with Translated HMMER☆27Updated this week
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 3 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆16Oct 24, 2020Updated 5 years ago
- A Bayesian method for doing transcriptome assembly from RNA-seq data☆25Feb 2, 2015Updated 11 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- a broadly applicable tool for automated gene identification and retrieval☆42Jun 16, 2026Updated last month
- long-read depth breaking☆12Apr 19, 2018Updated 8 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆39May 12, 2026Updated 2 months ago
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 6 years ago
- ☆15Jun 6, 2023Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago