hallamlab / LAST-PlusLinks
Parallel implementation of the LAST aligner
☆19Updated 8 years ago
Alternatives and similar repositories for LAST-Plus
Users that are interested in LAST-Plus are comparing it to the libraries listed below
Sorting:
- Find Unique genomic Regions☆29Updated 2 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 2 weeks ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- ☆15Updated 7 years ago
- PanGenomePipeline☆16Updated last year
- blast, shmlast☆22Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Implementation of ToL genome assembly workflows☆20Updated this week
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- Variant call adjudication☆16Updated 11 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆17Updated 6 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 10 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 6 months ago