sebi06 / czitoolsLinks
This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it also contains other useful utilities to visualize CZI images inside Napari.
☆14Updated last week
Alternatives and similar repositories for czitools
Users that are interested in czitools are comparing it to the libraries listed below
Sorting:
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 4 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- Use Napari Viewer to display CZI images☆12Updated 3 years ago
- Spotiflow plugin for napari☆12Updated 2 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆16Updated 4 months ago
- Course on Deep Learning for imaging using PyTorch☆13Updated 3 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 6 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated this week
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆37Updated this week
- Optimize image processing workflows in napari☆18Updated 4 months ago
- python tools for BigDataViewer☆22Updated 8 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 4 months ago
- ☆38Updated this week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆80Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆18Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 4 months ago
- ☆11Updated last week
- Python libraries for loading, running and packaging bioimage.io models☆33Updated this week
- ☆15Updated last month
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated this week
- ☆22Updated 2 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- A plugin to read whole slide images within napari.☆21Updated 6 months ago
- Evaluating the quality of a cell segmentation method without reference.☆12Updated last month
- dask empowered fast4dreg☆11Updated 9 months ago
- Browse your OMERO database from within napari.☆38Updated last month
- Visualizing feature measurements on label images in napari☆10Updated last year
- A template repo used to make new napari plugins☆26Updated this week
- A napari plugin to view and edit metadata☆10Updated 2 years ago