A fully scalable robust image feature extraction library.
☆28Mar 27, 2026Updated last week
Alternatives and similar repositories for nyxus
Users that are interested in nyxus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A napari plugin to view and edit layer metadata☆13Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆18Mar 30, 2026Updated last week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 4 months ago
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 2 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆15Jul 29, 2022Updated 3 years ago
- Interface to the Bioformats Java library☆13Feb 17, 2026Updated last month
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- A domain specific language for creating scientific pipelines☆15Mar 29, 2026Updated last week
- Generate multifunctional and macro recordable GUIs from Python classes☆45Apr 2, 2026Updated last week
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated 2 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- Multiple file format reading directly into napari using pure Python☆38Oct 15, 2025Updated 5 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Optimize image processing workflows in napari☆17May 1, 2025Updated 11 months ago
- 🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Pe…☆31Mar 25, 2026Updated 2 weeks ago
- ☆14Jan 25, 2024Updated 2 years ago
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated last month
- Spotiflow plugin for napari☆16Feb 2, 2026Updated 2 months ago
- Command-line client for Fractal☆49Apr 1, 2026Updated last week
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Mar 30, 2026Updated last week
- An introduction to OME-Zarr for big bioimaging data☆24Mar 30, 2026Updated last week
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated last month
- Linking napari layers with Matplotlib plots☆43Apr 2, 2026Updated last week
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 4 months ago
- ☆33May 2, 2025Updated 11 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆17Nov 10, 2022Updated 3 years ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 9 months ago
- ☆218Feb 4, 2026Updated 2 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- Conda Environment MAnager, a library to execute code in isolated environments.☆23Mar 31, 2026Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆68Apr 2, 2026Updated last week
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆50Updated this week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated 11 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 11 months ago