TheJacksonLaboratory / ezomeroLinks
A module with convenience functions for writing Python code that interacts with OMERO.
☆46Updated this week
Alternatives and similar repositories for ezomero
Users that are interested in ezomero are comparing it to the libraries listed below
Sorting:
- Track and lineage visualization with btrack and Napari☆45Updated 2 months ago
- ☆51Updated 7 months ago
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- Browse your OMERO database from within napari.☆39Updated this week
- Visualizing feature measurements on label images in napari☆10Updated last year
- Command-line client for Fractal☆47Updated this week
- Lectures for a napari training course☆51Updated 2 years ago
- ☆25Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last month
- ☆13Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆108Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆32Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 7 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 3 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 7 months ago
- StarDist plugin for napari☆38Updated last year
- ☆15Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- GIve easy, high-level access to ome-zarr fileset☆22Updated 2 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 8 months ago
- ☆22Updated 5 months ago
- Accurate and efficient spot detection for microscopy data☆111Updated this week
- ☆12Updated last year
- ☆36Updated last year
- Python libraries for loading, running and packaging bioimage.io models☆34Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆24Updated last week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆94Updated 2 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated last week