TheJacksonLaboratory / ezomeroLinks
A module with convenience functions for writing Python code that interacts with OMERO.
☆45Updated last week
Alternatives and similar repositories for ezomero
Users that are interested in ezomero are comparing it to the libraries listed below
Sorting:
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 10 months ago
- Browse your OMERO database from within napari.☆38Updated 2 weeks ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Visualizing feature measurements on label images in napari☆10Updated last year
- StarDist plugin for napari☆39Updated last year
- Command-line client for Fractal☆46Updated this week
- ☆24Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 4 months ago
- ☆23Updated 2 months ago
- ☆51Updated 4 months ago
- Lectures for a napari training course☆50Updated 2 years ago
- ☆32Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 4 months ago
- Accurate and efficient spot detection for microscopy data☆99Updated last month
- native Python dataclasses for the OME data model☆60Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆33Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆100Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 4 months ago
- ☆12Updated last month
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 6 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 10 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 9 months ago
- Running compute-intense parts of BigStitcher distributed☆26Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 9 months ago
- ☆12Updated last year
- GIve easy, high-level access to ome-zarr fileset☆17Updated 3 weeks ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago