JaneliaSciComp / pydantic-ome-ngffLinks
Pydantic models for OME-NGFF
☆24Updated last month
Alternatives and similar repositories for pydantic-ome-ngff
Users that are interested in pydantic-ome-ngff are comparing it to the libraries listed below
Sorting:
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated 2 months ago
- A napari plugin for zarr backed OME-NGFF images☆38Updated last week
- A minimal Python package for reading and validating OME-Zarr (meta)data☆35Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆53Updated 3 weeks ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆25Updated last week
- native Python dataclasses for the OME data model☆61Updated last week
- A 3D interactivity toolbox for napari☆37Updated 3 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆40Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 7 months ago
- GIve easy, high-level access to ome-zarr fileset☆21Updated last month
- Main tasks for the Fractal analytics platform☆21Updated last week
- ☆33Updated 5 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated last week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated 3 weeks ago
- Command-line client for Fractal☆47Updated this week
- Python module for registering and fusing multi-view microscopy data☆23Updated 7 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆17Updated 3 months ago
- ☆39Updated this week
- Reference implementation of the Graph Exchange File Format☆25Updated last week
- python tools for BigDataViewer☆22Updated 9 months ago
- ☆18Updated last week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆81Updated 2 weeks ago
- ☆22Updated 2 years ago
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 2 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated this week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 2 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆33Updated last week
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆28Updated 2 months ago
- ☆41Updated 2 weeks ago