JaneliaSciComp / pydantic-ome-ngffLinks
Pydantic models for OME-NGFF
☆24Updated last week
Alternatives and similar repositories for pydantic-ome-ngff
Users that are interested in pydantic-ome-ngff are comparing it to the libraries listed below
Sorting:
- A napari plugin for zarr backed OME-NGFF images☆33Updated 2 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆52Updated 2 weeks ago
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated last week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆39Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆49Updated last week
- native Python dataclasses for the OME data model☆60Updated 2 weeks ago
- A 3D interactivity toolbox for napari☆37Updated last month
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 5 months ago
- GIve easy, high-level access to ome-zarr fileset☆17Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆81Updated last week
- Command-line client for Fractal☆46Updated last week
- Python module for registering and fusing multi-view microscopy data☆23Updated 5 months ago
- ☆28Updated 3 months ago
- ☆17Updated 2 weeks ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 2 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆41Updated 2 weeks ago
- 1d plotting in napari-based canvas.☆26Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated last month
- python tools for BigDataViewer☆22Updated 7 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated last week
- Create web-based OME-Zarr galleries☆19Updated 3 months ago
- ☆22Updated 2 years ago
- ☆49Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆137Updated 2 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆33Updated 2 weeks ago
- A template repo used to make new napari plugins☆26Updated 3 weeks ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago
- Interface to the Bioformats Java library☆13Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated 2 weeks ago