JaneliaSciComp / pydantic-ome-ngffLinks
Pydantic models for OME-NGFF
☆24Updated last week
Alternatives and similar repositories for pydantic-ome-ngff
Users that are interested in pydantic-ome-ngff are comparing it to the libraries listed below
Sorting:
- A napari plugin for zarr backed OME-NGFF images☆37Updated 2 weeks ago
- A minimal Python package for reading and validating OME-Zarr (meta)data☆33Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated last month
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆49Updated last week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆39Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- GIve easy, high-level access to ome-zarr fileset☆17Updated 3 weeks ago
- native Python dataclasses for the OME data model☆60Updated last week
- A 3D interactivity toolbox for napari☆37Updated 2 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated last week
- Command-line client for Fractal☆46Updated last week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆80Updated last week
- ☆17Updated last month
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 6 months ago
- Main tasks for the Fractal analytics platform☆20Updated last week
- Python module for registering and fusing multi-view microscopy data☆23Updated 6 months ago
- ☆30Updated 4 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 2 months ago
- Create web-based OME-Zarr galleries☆19Updated 4 months ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆139Updated last month
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆18Updated last week
- ☆39Updated 2 weeks ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated 3 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆42Updated last month
- ☆50Updated last week
- Interface to the Bioformats Java library☆13Updated 2 months ago
- ☆36Updated last month
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆30Updated last year
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆28Updated last month
- 1d plotting in napari-based canvas.☆26Updated this week