serve Zarr datasets via HTTP
☆32Jun 12, 2023Updated 3 years ago
Alternatives and similar repositories for simple-zarr-server
Users that are interested in simple-zarr-server are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 8 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆72Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Updated this week
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Block-wise operations for large nD volumes☆45Updated this week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 10 months ago
- An introduction to OME-Zarr for big bioimaging data☆27Jul 1, 2026Updated 3 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated 10 months ago
- ☆18May 15, 2026Updated 2 months ago
- Yet Another Ome-ZARR Schema❗️☆23Jul 1, 2026Updated 3 weeks ago
- Reading HDF5 files with Zarr☆12Oct 5, 2021Updated 4 years ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Jul 10, 2026Updated 2 weeks ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Dec 6, 2022Updated 3 years ago
- Command-line client for Fractal☆49Updated this week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- ☆26Updated this week
- A napari plugin for zarr backed OME-NGFF images☆53Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆166Jul 17, 2026Updated last week
- Resources for teaching/preparing to teach bioimage analysis☆63Updated this week
- ☆16Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆22Mar 12, 2026Updated 4 months ago
- ITK IO for images stored in OME-Zarr format.☆11Sep 4, 2025Updated 10 months ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆21Updated this week
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Mar 6, 2026Updated 4 months ago
- Spatial omics analysis and visualization library☆27Updated this week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Jun 5, 2026Updated last month
- A tool to support interactive machine learning for cryoET data☆12Aug 30, 2024Updated last year
- Teaching materials for improving research software writing abilities.☆15Jul 8, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A fully scalable robust image feature extraction library.☆29Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- dask empowered fast4dreg☆17Mar 11, 2026Updated 4 months ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 3 months ago
- A napari plugin to view and edit layer metadata☆13Updated this week
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated last year