aeisenbarth / ngff-writerLinks
A writer and reader for NGFF OME-Zarr datasets
☆14Updated 3 years ago
Alternatives and similar repositories for ngff-writer
Users that are interested in ngff-writer are comparing it to the libraries listed below
Sorting:
- A minimal Python package for reading OME-Zarr (meta)data☆29Updated this week
- A napari plugin for zarr backed OME-NGFF images☆33Updated this week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆14Updated last week
- A 3D interactivity toolbox for napari☆34Updated last month
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated 2 months ago
- Pydantic models for OME-NGFF☆23Updated last week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated last week
- Create web-based OME-Zarr galleries☆17Updated last month
- native Python dataclasses for the OME data model☆56Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated last month
- Visualizing feature measurements on label images in napari☆10Updated 10 months ago
- NGIO is a Python library to streamline OME-Zarr image analysis workflows.☆14Updated last week
- ☆17Updated last week
- ☆29Updated last year
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆40Updated last week
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- ilastik plugin for napari☆14Updated last year
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated 2 months ago
- Command-line client for Fractal☆46Updated last week
- ☆36Updated this week
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆16Updated 2 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆27Updated last year
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 6 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month
- GIve easy, high-level access to ome-zarr fileset☆16Updated 2 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 3 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- MethodsJ2☆14Updated 3 years ago