aeisenbarth / ngff-writerLinks
A writer and reader for NGFF OME-Zarr datasets
☆14Updated 3 years ago
Alternatives and similar repositories for ngff-writer
Users that are interested in ngff-writer are comparing it to the libraries listed below
Sorting:
- A napari plugin for zarr backed OME-NGFF images☆38Updated 2 weeks ago
- Pydantic models for OME-NGFF☆24Updated last month
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated 3 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated 2 months ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Updated 2 months ago
- Create web-based OME-Zarr galleries☆21Updated 3 weeks ago
- A minimal Python package for reading and validating OME-Zarr (meta)data☆35Updated this week
- native Python dataclasses for the OME data model☆61Updated 2 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 7 months ago
- A 3D interactivity toolbox for napari☆37Updated 3 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆25Updated last week
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 2 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆53Updated this week
- Command-line client for Fractal☆47Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆17Updated 3 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆31Updated 3 weeks ago
- serve Zarr datasets via HTTP☆31Updated 2 years ago
- ☆18Updated 2 weeks ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆40Updated this week
- Python module for registering and fusing multi-view microscopy data☆23Updated 7 months ago
- ☆39Updated last week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated 3 weeks ago
- ☆23Updated 4 years ago
- Interface to the Bioformats Java library☆13Updated 3 months ago
- ilastik plugin for napari☆14Updated last month
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆24Updated this week
- Main tasks for the Fractal analytics platform☆21Updated last week
- litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexibl…☆18Updated 2 months ago