aeisenbarth / ngff-writer
A writer and reader for NGFF OME-Zarr datasets
☆14Updated 3 years ago
Alternatives and similar repositories for ngff-writer:
Users that are interested in ngff-writer are comparing it to the libraries listed below
- A minimal Python package for reading OME-Zarr (meta)data☆23Updated 2 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆32Updated this week
- A 3D interactivity toolbox for napari☆33Updated 3 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆21Updated last week
- ☆16Updated this week
- Pydantic models for OME-NGFF☆23Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆32Updated last month
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 2 weeks ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆34Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- GIve easy, high-level access to ome-zarr fileset☆14Updated this week
- Interface to the Bioformats Java library☆13Updated 2 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 4 months ago
- ilastik plugin for napari☆14Updated 11 months ago
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- ☆29Updated 11 months ago
- native Python dataclasses for the OME data model☆55Updated 2 weeks ago
- Command-line client for Fractal☆45Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated last month
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated last month
- Python module for registering and fusing multi-view microscopy data☆23Updated last week
- Browse your OMERO database from within napari.☆36Updated last week
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆14Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 6 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- Create web-based OME-Zarr galleries☆15Updated last month
- ☆22Updated 3 years ago