scalable multiscale image pyramids in python
☆29Jul 25, 2024Updated last year
Alternatives and similar repositories for xarray-multiscale
Users that are interested in xarray-multiscale are comparing it to the libraries listed below
Sorting:
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated 11 months ago
- Tools for handling FIB-SEM data and annotations☆22Apr 4, 2025Updated 10 months ago
- dask empowered fast4dreg☆15Feb 20, 2026Updated last week
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Sep 15, 2025Updated 5 months ago
- Affinity based segmentation algorithms and tools☆10May 12, 2025Updated 9 months ago
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated 11 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated 3 weeks ago
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 4 months ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- Quantitative Data Analysis for spectroscopic LEEM☆18Feb 17, 2022Updated 4 years ago
- Block-wise operations for large nD volumes☆45Feb 19, 2026Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆27Mar 14, 2025Updated 11 months ago
- Running compute-intense parts of BigStitcher distributed☆30Feb 10, 2026Updated 2 weeks ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 10 months ago
- A napari plugin to view and edit metadata☆13Updated this week
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- Introduction to Python Programming☆11Mar 31, 2020Updated 5 years ago
- A pilot experiment to dissminate information about Janelia's biomaging data formats.☆12Jan 30, 2025Updated last year
- Teaching materials for improving research software writing abilities.☆13Dec 1, 2025Updated 2 months ago
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated last month
- MorphoFeatures code and data☆22May 4, 2023Updated 2 years ago
- Main tasks for the Fractal analytics platform☆23Updated this week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆28Updated this week
- General-purpouse camera capture plugin for data streaming to napari☆26Mar 18, 2024Updated last year
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- ☆14Jan 25, 2024Updated 2 years ago
- ☆13Mar 10, 2020Updated 5 years ago
- ☆24Sep 13, 2025Updated 5 months ago
- Interface for using cubed with xarray☆32Feb 2, 2026Updated 3 weeks ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 2 years ago
- ☆13Mar 10, 2022Updated 3 years ago
- ☆15Feb 5, 2025Updated last year