JaneliaSciComp / xarray-multiscale
scalable multiscale image pyramids in python
☆26Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for xarray-multiscale
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆38Updated this week
- Illustrations created by Henning Falk for the Zarr community☆29Updated last year
- Pydantic models for OME-NGFF☆21Updated this week
- Fusing image tiles with dask array's map_blocks☆29Updated 8 months ago
- serve Zarr datasets via HTTP☆24Updated last year
- Python module for registering and fusing multi-view microscopy data☆23Updated last year
- ☆19Updated last month
- A 3D interactivity toolbox for napari☆32Updated last month
- ☆19Updated last year
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆29Updated this week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆40Updated this week
- ☆16Updated 3 weeks ago
- Pydantic models for Zarr☆26Updated 7 months ago
- ☆40Updated 3 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆19Updated 2 weeks ago
- Linking napari layers with Matplotlib plots☆39Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- A napari plugin for zarr backed OME-NGFF images☆30Updated this week
- ilastik plugin for napari☆13Updated 7 months ago
- Speed up coding/extending image analysis in Python.☆30Updated 2 weeks ago
- 1d plotting in napari-based canvas.☆24Updated this week
- Gamified image segmentation quality estimation☆17Updated 2 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated this week
- Napari gaming☆16Updated 2 years ago
- napari plugin for iteratively improving 3D instance segmentation of cells (u-net x watershed)☆9Updated 7 months ago
- python tools for BigDataViewer☆21Updated last year
- Reading HDF5 files with Zarr☆11Updated 3 years ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆18Updated 4 months ago
- Paint segmentations directly to on-disk/remote zarr arrays☆14Updated 4 months ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆17Updated last month