Scalable Maximum Likelihood Estimation of Phylogenetic Models
☆30Mar 7, 2025Updated last year
Alternatives and similar repositories for CherryML
Users that are interested in CherryML are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EMERALD calculates safety-windows by exploring the suboptimal alignment space☆19Jun 15, 2026Updated 4 months ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 5 years ago
- ☆16Apr 3, 2025Updated last year
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆22Apr 9, 2025Updated last year
- ☆12Mar 12, 2026Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- a fast, interactive, light-weight, customizable, web-based comparative genomics viewer with simple text input format.☆10Aug 5, 2011Updated 15 years ago
- Phylogenetics toolkit for the PyData Ecosystem☆11May 10, 2024Updated 2 years ago
- Pan gGnome Viewer☆10Sep 24, 2026Updated last month
- ☆12Updated this week
- This repository contains the source code of the R package for EvoGeneX, a software to infer the mode of evolution from the gene expressio…☆31Dec 1, 2025Updated 10 months ago
- ☆21Oct 31, 2024Updated last year
- ☆20Feb 25, 2025Updated last year
- ☆13Jul 8, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 8 months ago
- Scripts and datasets for the analysis on convergent genome evolution of animal terrestrialisation☆16Sep 27, 2025Updated last year
- phylobayes mpi☆28Jul 30, 2026Updated 3 months ago
- ☆22Jul 14, 2023Updated 3 years ago
- Inference of Ortholog Groups using Hidden Markov Models☆39Oct 22, 2026Updated last week
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Oct 5, 2026Updated 3 weeks ago
- ☆22Jan 11, 2024Updated 2 years ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆58Oct 5, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Dec 2, 2015Updated 10 years ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- ☆14Dec 3, 2024Updated last year
- Parsimony on tree sequences☆13Jun 27, 2025Updated last year
- Evodictor is a software package for learning patterns and predicting the future of evolution by gain/losses of given traits☆14Sep 27, 2024Updated 2 years ago
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆12Nov 7, 2024Updated last year
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆91Updated this week
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- ☆13Aug 4, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16Mar 23, 2026Updated 7 months ago
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆33Jun 17, 2025Updated last year
- Detect recombination hotspots using population genetic data.☆17Jun 10, 2020Updated 6 years ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆55Dec 3, 2024Updated last year
- Nail is an Alignment Inference tooL☆71Updated this week
- ☆13Mar 8, 2024Updated 2 years ago
- Infers a phylogenetic tree from protein structures☆112Aug 20, 2026Updated 2 months ago