W-L / deviaTELinks
Python tool for the analysis and visualization of mobile genetic elements
☆20Updated 4 months ago
Alternatives and similar repositories for deviaTE
Users that are interested in deviaTE are comparing it to the libraries listed below
Sorting:
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- ☆26Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- ☆26Updated 5 years ago
- Genome-Genome circle synteny☆25Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- ☆33Updated 4 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated 11 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago
- transposable element typing pipeline☆19Updated last year
- Compute N50/NG50 and auN/auNG☆32Updated 2 years ago
- A comparative genome scaffolding tool☆16Updated 7 years ago
- ☆28Updated 2 years ago
- Visualising discordant reads☆15Updated 10 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago