NicolaDM / MAPLELinks
MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
☆51Updated this week
Alternatives and similar repositories for MAPLE
Users that are interested in MAPLE are comparing it to the libraries listed below
Sorting:
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 2 weeks ago
- A versatile toolkit for k-mers with taxonomic information☆79Updated last month
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated last month
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆54Updated 3 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- ☆31Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last week
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Updated 3 years ago
- Phylogenetic orthology inference for comparative genomics☆58Updated this week
- orthology assignment using phylogenetic and network analyses☆47Updated 7 months ago
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆35Updated last week
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆67Updated 3 weeks ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 10 months ago
- SARS-CoV-2 workflow for nanopore sequence data☆42Updated 2 months ago
- ☆27Updated 5 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated last month
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated last year
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated last year
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆58Updated last year
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆35Updated 2 months ago