NicolaDM / MAPLE
MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
☆48Updated 3 weeks ago
Alternatives and similar repositories for MAPLE:
Users that are interested in MAPLE are comparing it to the libraries listed below
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆28Updated 3 months ago
- Reference-guided multiple sequence alignment of viral genomes☆65Updated last month
- A collection of documented examples using TreeTime☆20Updated 5 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆56Updated 9 months ago
- Detection of incorrectly labeled sequences across kingdoms☆82Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆54Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆85Updated 2 months ago
- Bioinformatics Pipeline and Visualization resources☆55Updated 5 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 2 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆70Updated this week
- orthology assignment using phylogenetic and network analyses☆46Updated 4 months ago
- Primer schemes for real-time genome epidemiology☆27Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023☆91Updated last week
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆54Updated last month
- Influenza genome analysis Nextflow workflow☆26Updated last month
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆32Updated 3 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 3 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 2 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 7 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 6 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆35Updated this week
- Pan-Genomic Matching Statistics☆50Updated 10 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆35Updated 2 months ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆30Updated last year
- Process consensus file for COG-UK data☆14Updated 3 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 4 months ago
- Precise host read removal☆84Updated 2 months ago
- Tiberius is a deep learning gene finder.☆47Updated last week