AlexKnyshov / alibaseqView external linksLinks
Alignment-Based Sequence extraction
☆15Feb 14, 2022Updated 4 years ago
Alternatives and similar repositories for alibaseq
Users that are interested in alibaseq are comparing it to the libraries listed below
Sorting:
- Quartet Sampling method for phylogenetic branch support evaluation☆19Feb 26, 2024Updated last year
- Shark genomics & beyond - This is a central portal page for the project Squalomix, directed mainly by Molecular Life History Laboratory a…☆11Aug 15, 2025Updated 6 months ago
- ☆13Jun 6, 2023Updated 2 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Dec 15, 2022Updated 3 years ago
- ☆26Apr 14, 2021Updated 4 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated last year
- ☆36Nov 3, 2024Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Jan 3, 2026Updated last month
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16May 27, 2025Updated 8 months ago
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆15Jun 21, 2024Updated last year
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆37Apr 25, 2024Updated last year
- shell tools for processing phylogenetic trees☆119Aug 30, 2022Updated 3 years ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆20Mar 7, 2025Updated 11 months ago
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- Visualize and perform a multitude of operations on newick files☆17Mar 7, 2022Updated 3 years ago
- ☆18Dec 5, 2020Updated 5 years ago
- ☆21Dec 30, 2025Updated last month
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆44Apr 25, 2024Updated last year
- Implementation of the TreeShrink problem☆54Sep 13, 2024Updated last year
- CDS prediction in transcripts☆24Mar 5, 2025Updated 11 months ago
- Calculate summary statistics and manipulate multiple sequence alignments☆91Jan 28, 2026Updated 2 weeks ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆25Jun 16, 2021Updated 4 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆23Sep 23, 2024Updated last year
- Tutorial for visualising admixture on a map☆24Jan 4, 2021Updated 5 years ago
- spruceup☆25Aug 15, 2025Updated 6 months ago
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated last year
- BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts☆72Nov 17, 2025Updated 2 months ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Sep 5, 2019Updated 6 years ago
- mPTP - a tool for single-locus species delimitation☆30Sep 19, 2023Updated 2 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆203Nov 23, 2025Updated 2 months ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated last year
- Method for dating admixture in ancient DNA specimens☆28Jan 12, 2022Updated 4 years ago
- Orthology prediction using a graph-based, reciprocal approach with profile hidden Markov models☆33Jan 7, 2022Updated 4 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆38Jan 19, 2026Updated 3 weeks ago