Alignment-Based Sequence extraction
☆15Feb 14, 2022Updated 4 years ago
Alternatives and similar repositories for alibaseq
Users that are interested in alibaseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Dec 15, 2022Updated 3 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆20Feb 26, 2024Updated 2 years ago
- Shark genomics & beyond - This is a central portal page for the project Squalomix, directed mainly by Molecular Life History Laboratory a…☆11May 13, 2026Updated last week
- ☆13Apr 5, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19Dec 5, 2020Updated 5 years ago
- ☆15Jun 6, 2023Updated 2 years ago
- ☆26Apr 14, 2021Updated 5 years ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- ☆36Mar 5, 2026Updated 2 months ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆37Apr 25, 2024Updated 2 years ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆44Apr 25, 2024Updated 2 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆38Jan 3, 2026Updated 4 months ago
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆15Jun 21, 2024Updated last year
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16Mar 23, 2026Updated last month
- Visualize and perform a multitude of operations on newick files☆17Mar 7, 2022Updated 4 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- Tutorial for visualising admixture on a map☆25Jan 4, 2021Updated 5 years ago
- shell tools for processing phylogenetic trees☆120Aug 30, 2022Updated 3 years ago
- Implementation of the TreeShrink problem☆56Apr 28, 2026Updated 3 weeks ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler☆10Nov 8, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- CDS prediction in transcripts☆23Mar 5, 2025Updated last year
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆24Mar 7, 2025Updated last year
- ☆21Dec 30, 2025Updated 4 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Calculate summary statistics and manipulate multiple sequence alignments☆96Jan 28, 2026Updated 3 months ago
- association analysis of distance matrices using gradient forest approach☆16Oct 7, 2025Updated 7 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 5 months ago
- spruceup☆25Aug 15, 2025Updated 9 months ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆65Sep 5, 2019Updated 6 years ago
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated 9 months ago
- BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts☆72Mar 14, 2026Updated 2 months ago