ding-lab / BICSEQ2Links
BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA
☆16Updated 4 years ago
Alternatives and similar repositories for BICSEQ2
Users that are interested in BICSEQ2 are comparing it to the libraries listed below
Sorting:
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Long read to rMATS☆31Updated 2 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆9Updated last year
- Codes and Data for FFPEsig manuscript☆17Updated last year
- ☆23Updated 4 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated 2 months ago
- ☆12Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated last week
- ☆22Updated 5 months ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- ☆15Updated last year
- cnv-seq with custom bugfix☆10Updated 12 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- ☆21Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- Reconstruction of focal amplifications with long reads☆21Updated last week
- ☆20Updated 7 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 3 months ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago