ding-lab / BICSEQ2
BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA
☆16Updated 3 years ago
Alternatives and similar repositories for BICSEQ2:
Users that are interested in BICSEQ2 are comparing it to the libraries listed below
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆15Updated 11 months ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- ☆21Updated 2 months ago
- ☆13Updated 10 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 8 months ago
- ☆11Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated 10 months ago
- Reconstruction of focal amplifications with long reads☆18Updated this week
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆18Updated 5 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated last week
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- ☆12Updated 2 years ago
- Long read to rMATS☆31Updated last year
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆16Updated 4 months ago
- Third-generation fusion gene detection☆14Updated last year
- Workflow for Sequenza, cellularity and ploidy☆19Updated 8 months ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- Codes and Data for FFPEsig manuscript☆15Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 8 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- Filter and prioritize fusion calls☆20Updated 5 months ago
- Annotation and segmentation of MAS-seq data☆20Updated last year
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆8Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last week