cvn001 / transflowLinks
A snakemake workflow for WGS-based tuberculosis transmission analysis
☆19Updated 10 months ago
Alternatives and similar repositories for transflow
Users that are interested in transflow are comparing it to the libraries listed below
Sorting:
- Various scripts for efficient processing of 10k Salmonella genomes☆15Updated 4 years ago
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆25Updated 8 months ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Updated 3 years ago
- Targeted Detection and Reconstruction of Plasmids☆21Updated last year
- vSNP -- validate SNPs☆21Updated last year
- A pipeline to investigate horizontal gene transfer from NGS data☆26Updated 4 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- ☆26Updated 2 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Updated last year
- Workflow to construct linear representation of pan genome from deep WGS data and public assemblies☆29Updated last year
- ☆14Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 4 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆11Updated 3 years ago
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆22Updated last month
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Updated 2 years ago
- Quality control plotting for long reads☆10Updated last year
- Program for finding horizontal gene transfer using BLAST result☆11Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- ☆21Updated 5 years ago
- viralComplete: BLAST-based viral completeness verification☆24Updated 4 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆22Updated this week
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 weeks ago