☆26Dec 18, 2024Updated last year
Alternatives and similar repositories for ReConPlot
Users that are interested in ReConPlot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Somatic structural variant caller for long-read data☆91Mar 3, 2026Updated last month
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 9 months ago
- Learn fundamentals of scientific computing for biochemistry using Jupyter notebooks in Python☆16Dec 2, 2025Updated 4 months ago
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- ☆16Mar 1, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- A tool for somatic structural variant calling using long reads☆168Updated this week
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Mar 19, 2026Updated 3 weeks ago
- CoRAL: Reconstruction of focal amplifications with long reads☆24Apr 7, 2026Updated last week
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- ☆14Mar 28, 2025Updated last year
- ☆27Mar 1, 2026Updated last month
- ☆11May 12, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆16Jan 15, 2025Updated last year
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆71Mar 19, 2026Updated 3 weeks ago
- ☆15Aug 17, 2023Updated 2 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆26Jan 28, 2026Updated 2 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- ☆11Feb 23, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated 11 months ago
- ☆33Nov 6, 2022Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Feb 14, 2025Updated last year
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆22Jan 23, 2026Updated 2 months ago
- A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…☆11Apr 1, 2026Updated 2 weeks ago
- ☆78Jul 12, 2023Updated 2 years ago
- A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).☆35Mar 28, 2026Updated 2 weeks ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 7 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference☆60Apr 27, 2018Updated 7 years ago
- Align subreads to ccs reads☆14Jun 11, 2025Updated 10 months ago
- ☆17Oct 3, 2023Updated 2 years ago
- DNN-based small variant caller☆12May 2, 2022Updated 3 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Bidirectional WFA (Paper)☆49May 20, 2024Updated last year
- ☆20Nov 17, 2025Updated 4 months ago