Alternatives and similar repositories for ReConPlot

Users that are interested in ReConPlot are comparing it to the libraries listed below

• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated last month
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 7 months ago
• LappalainenLab / lorals
  ☆36Updated 2 years ago
• mulinlab / VarNote
  Fast and scalable variant annotation tool
  ☆30Updated 3 years ago
• KolmogorovLab / minda
  ☆23Updated 4 months ago
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 11 months ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 4 months ago
• a2iEditing / deNovo-Detect
  ☆13Updated 2 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆37Updated 5 months ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆64Updated 11 months ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆24Updated 3 weeks ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• dixonlab / hic_breakfinder
  ☆36Updated 6 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 5 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated 3 weeks ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆33Updated 6 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆53Updated last year
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 5 months ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated last year
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆18Updated last week
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆14Updated last year
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆30Updated last week
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 6 months ago
• DyogenIBENS / FINSURF
  FINSURF is a tool designed to analyse lists of sequences variants in the human genome.
  ☆12Updated 2 years ago
• fakedrtom / SVAFotate
  ☆44Updated 11 months ago
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆35Updated 2 weeks ago