Database of genomes integrated from the gut microbiome and other environments
☆45Feb 3, 2023Updated 3 years ago
Alternatives and similar repositories for IGGdb
Users that are interested in IGGdb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated 2 years ago
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆135Oct 6, 2023Updated 2 years ago
- ☆23Nov 6, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21Feb 13, 2020Updated 6 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆39Sep 28, 2022Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 4 years ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 2 months ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Curated Metagenomic Data of the Human Microbiome☆155May 14, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Mar 23, 2026Updated 2 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆27Apr 22, 2020Updated 6 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 3 months ago
- ☆11Mar 11, 2025Updated last year
- ** Blood metabolome predicts gut microbiome α-diversity in humans**☆24Sep 23, 2019Updated 6 years ago
- Microbiome profiling☆15Nov 20, 2025Updated 6 months ago
- Supporting code for uncultivated gut virus manuscript☆81Jul 17, 2023Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆162Apr 25, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Sample Metadata Curation for curatedMetagenomicData☆31Updated this week
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆47Oct 3, 2023Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- ☆20Jun 8, 2020Updated 5 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆36Jul 12, 2022Updated 3 years ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20May 22, 2020Updated 6 years ago
- MGnify API toolkit☆19Jan 31, 2025Updated last year
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated last year
- Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.☆13Dec 8, 2017Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆91May 11, 2026Updated last week
- ☆16Jun 2, 2021Updated 4 years ago
- gutSMASH☆59Oct 3, 2025Updated 7 months ago
- A tutorial for Metagenome-Atlas☆24Nov 24, 2023Updated 2 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- DAS Tool☆173May 2, 2024Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Apr 18, 2021Updated 5 years ago