snayfach / IGGdb
Database of genomes integrated from the gut microbiome and other environments
☆44Updated 2 years ago
Alternatives and similar repositories for IGGdb:
Users that are interested in IGGdb are comparing it to the libraries listed below
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated 9 months ago
- ☆23Updated 6 years ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- StrainFinder☆27Updated 6 years ago
- De novo Extraction of Strains from MetAgeNomes☆69Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated last month
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- ☆32Updated last year
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆57Updated 5 years ago
- Robust Aitchison PCA from sparse count data☆33Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 3 weeks ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 3 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆48Updated 6 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- ☆41Updated 4 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 9 months ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 6 years ago
- ☆28Updated last month
- Visualize whole genome alignments as linear maps☆70Updated 4 months ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago