snayfach / IGGdbLinks
Database of genomes integrated from the gut microbiome and other environments
☆45Updated 2 years ago
Alternatives and similar repositories for IGGdb
Users that are interested in IGGdb are comparing it to the libraries listed below
Sorting:
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- ☆23Updated 7 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- StrainFinder☆27Updated 7 years ago
- De novo Extraction of Strains from MetAgeNomes☆70Updated 5 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 5 months ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 6 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 8 months ago
- Robust Aitchison PCA from sparse count data☆35Updated 2 years ago
- ☆41Updated 2 months ago
- Scalable creating/updating of metagenome profiling databases☆61Updated 3 weeks ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 7 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- A comprehensive pipeline for short read metagenomic data☆24Updated 4 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆61Updated 10 months ago
- ☆20Updated 8 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆22Updated 4 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago