PriceLab / ShannonMetsLinks
** Blood metabolome predicts gut microbiome α-diversity in humans**
☆24Updated 6 years ago
Alternatives and similar repositories for ShannonMets
Users that are interested in ShannonMets are comparing it to the libraries listed below
Sorting:
- Analysis framework for integrating gut microbiome and host gene expression data☆34Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- An interactive web-tool for RNA-seq analysis☆70Updated 9 months ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆35Updated 5 years ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆39Updated last year
- ☆24Updated 5 years ago
- repository of the 2-day course "First steps with R in Life Sciences" from SIB-training☆52Updated last week
- A modest re-desing update for the classic FastQC report.☆29Updated 2 months ago
- Cross-disease comparison of case-control gut microbiome studies☆67Updated 6 years ago
- A tutorial for pathway visualization using tidyverse, igraph, and ggraph☆60Updated last year
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆31Updated 5 years ago
- Exploration of Omics data☆25Updated 4 years ago
- ☆11Updated 5 years ago
- ☆13Updated 2 years ago
- Make customized upset plots: from raw data to plots☆62Updated 2 months ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆77Updated last week
- ☆20Updated 5 years ago
- ☆43Updated 8 years ago
- tidyMicro GitHup Repository☆21Updated 4 years ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 months ago
- mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate☆28Updated 4 months ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 8 years ago
- ☆14Updated 3 years ago
- R shiny app for interactive microbiome analysis☆56Updated 5 months ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Updated 5 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- 2018 Bioconductor Workshops☆76Updated 6 years ago
- Microbiome analysis☆53Updated last week