** Blood metabolome predicts gut microbiome α-diversity in humans**
☆24Sep 23, 2019Updated 6 years ago
Alternatives and similar repositories for ShannonMets
Users that are interested in ShannonMets are comparing it to the libraries listed below
Sorting:
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Oct 30, 2025Updated 4 months ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated last year
- ☆12Jun 12, 2019Updated 6 years ago
- ☆11Dec 28, 2019Updated 6 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Feb 3, 2023Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- Workflow to generate interactive feature selection report for cross-sectional or longitudinal studies☆11May 12, 2025Updated 9 months ago
- ☆15Mar 14, 2023Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 6 years ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Nov 30, 2023Updated 2 years ago
- A workshop on microbiome analysis using Bioconductor☆15Jun 20, 2019Updated 6 years ago
- Cross-disease comparison of case-control gut microbiome studies☆69Feb 2, 2019Updated 7 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 3 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆126May 12, 2024Updated last year
- Code used in MiCE 8992 Spring 2016☆44Apr 19, 2016Updated 9 years ago
- ☆19Dec 15, 2020Updated 5 years ago
- This repository includes the code used in our multiomics BMI study.☆19Jul 6, 2023Updated 2 years ago
- A companion R package for the MicrobiomeAnalyst web server☆131Feb 22, 2026Updated last week
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆21Dec 9, 2022Updated 3 years ago
- R package for downstream Microbiome analysis☆31Dec 10, 2024Updated last year
- ☆22Nov 6, 2020Updated 5 years ago
- ☆23May 16, 2020Updated 5 years ago
- Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)☆21Feb 3, 2026Updated last month
- Curated Metagenomic Data of the Human Microbiome☆151Jan 21, 2026Updated last month
- DIABLO - an integrative multi-group, multi-dataset classification method☆27Feb 26, 2019Updated 7 years ago
- ☆25Oct 9, 2020Updated 5 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- ☆10Feb 9, 2026Updated 3 weeks ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Aug 22, 2023Updated 2 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Oct 1, 2024Updated last year
- Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL☆28May 1, 2020Updated 5 years ago
- Example R script to use Cytoscape via RESTful API module.☆28Apr 22, 2019Updated 6 years ago
- bioBakery tools for meta'omic profiling☆307Jun 3, 2025Updated 9 months ago
- Proteomics label-free quantification (LFQ) analysis pipeline☆37Jan 13, 2025Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆30May 1, 2025Updated 10 months ago