Finn-Lab / MGS-gut
Analysing Metagenomic Species (MGS)
☆41Updated 4 years ago
Alternatives and similar repositories for MGS-gut:
Users that are interested in MGS-gut are comparing it to the libraries listed below
- ☆32Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- ☆41Updated 4 years ago
- ☆23Updated 6 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆25Updated 3 weeks ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 9 months ago
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆18Updated last year
- Course material for the metagenomics course☆43Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆52Updated 2 years ago
- ☆50Updated 11 months ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆57Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- ☆48Updated 10 months ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆41Updated 3 weeks ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆57Updated 5 years ago
- Estimate metagenomic coverage and sequence diversity☆48Updated 6 months ago