Finn-Lab / MGS-gutLinks
Analysing Metagenomic Species (MGS)
☆41Updated 4 years ago
Alternatives and similar repositories for MGS-gut
Users that are interested in MGS-gut are comparing it to the libraries listed below
Sorting:
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆32Updated 7 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- ☆41Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- ☆56Updated last year
- ☆32Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆48Updated last year
- Microbiome classification pipeline☆66Updated 3 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆23Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- ☆34Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated 5 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆63Updated 11 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated 4 months ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 2 weeks ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated 11 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 4 years ago
- ☆22Updated 5 years ago