tmbuza / iMAPLinks
iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
☆13Updated last year
Alternatives and similar repositories for iMAP
Users that are interested in iMAP are comparing it to the libraries listed below
Sorting:
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆21Updated 6 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆21Updated 2 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated last week
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- A very simple BLAST filtering pipeline☆18Updated 11 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Do microbiome analysis with dada2 and phyloseq object☆13Updated 7 months ago
- tidyMicro GitHup Repository☆18Updated 3 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆19Updated last month
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualiz…☆13Updated 4 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- ☆12Updated 7 years ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Updated 6 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated last month
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- Microbiome research☆20Updated 3 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Fast alignment-free pangenome creation and exploration☆27Updated 5 years ago
- Create your own PanViz visualizations☆20Updated 7 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 9 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year