tmbuza / iMAP
iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
☆13Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for iMAP
- A comprehensive and customizable R package for microbiome analysis.☆21Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated 6 months ago
- A very simple BLAST filtering pipeline☆18Updated 10 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 8 months ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆20Updated 5 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 7 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆22Updated 10 months ago
- tidyMicro GitHup Repository☆18Updated 3 years ago
- accessory functions for processing microbial community data☆12Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆29Updated last year
- Talk to the NCBI EUtils☆20Updated 4 years ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆16Updated this week
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 6 months ago
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualiz…☆13Updated 9 months ago
- MicrobeDirectory 2.0☆22Updated 4 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- ☆13Updated 4 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- Microbiome research☆20Updated 2 years ago
- ☆26Updated 8 months ago
- Metagenomic AnalySis with QUantitative pipEline☆12Updated 5 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 4 years ago
- Do microbiome analysis with dada2 and phyloseq object☆12Updated last month
- Tools for extracting individual genomes from metagenomes☆17Updated 11 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago