metagenome-atlas / TutorialLinks
A tutorial for Metagenome-Atlas
☆23Updated last year
Alternatives and similar repositories for Tutorial
Users that are interested in Tutorial are comparing it to the libraries listed below
Sorting:
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated last month
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆61Updated 10 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 6 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated 10 months ago
- A visualization tool for exploratory data analysis of metagenomic data☆37Updated 3 years ago
- A package to annotate protein sequences☆59Updated 5 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 2 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆49Updated 3 weeks ago
- A comprehensive pipeline for short read metagenomic data☆24Updated 4 years ago
- ☆30Updated 6 months ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆41Updated last year
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆23Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Qiime2 snakemake pipeline☆18Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 6 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 3 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated 2 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated 10 months ago
- workflows for offline analysis of 16S rRNA Nanopore data☆14Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆39Updated 2 years ago
- gutSMASH☆55Updated 7 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆15Updated last month
- ☆41Updated 4 years ago