☆20Jun 8, 2020Updated 5 years ago
Alternatives and similar repositories for reference-frames
Users that are interested in reference-frames are comparing it to the libraries listed below
Sorting:
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 5 years ago
- ☆28Feb 27, 2024Updated 2 years ago
- R package version of the splinectomy longitudinal statistical analysis tools☆17Apr 21, 2022Updated 3 years ago
- Neural networks for microbe-metabolite interaction analysis☆129Nov 4, 2022Updated 3 years ago
- Repo for course Tools for complex data analysis☆11Jul 15, 2024Updated last year
- Look Up Guild Information for Fungi in R☆23Mar 20, 2025Updated 11 months ago
- Functions for compositional analysis of high throughput sequencing☆29Dec 8, 2023Updated 2 years ago
- ☆18Nov 19, 2022Updated 3 years ago
- ☆24May 6, 2020Updated 5 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- Compare microbial co-occurrence networks based on the trans_network class of microeco package☆12Feb 15, 2026Updated 2 weeks ago
- Linear Decomposition Model☆25Jun 16, 2023Updated 2 years ago
- ☆22Nov 6, 2020Updated 5 years ago
- ☆47Feb 17, 2020Updated 6 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago
- Dissimilarity Overlap Curve analysis☆11Nov 14, 2022Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Feb 3, 2023Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 2 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Apr 11, 2023Updated 2 years ago
- ☆33Jan 21, 2026Updated last month
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated last year
- Compositional Lotka-Volterra☆16May 31, 2024Updated last year
- ☆12Apr 6, 2021Updated 4 years ago
- Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/☆12Aug 12, 2021Updated 4 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Nov 8, 2019Updated 6 years ago
- ☆15Jun 26, 2025Updated 8 months ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 5 years ago
- ☆12May 11, 2016Updated 9 years ago
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 4 years ago
- ☆12Oct 28, 2021Updated 4 years ago
- A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/☆18Nov 15, 2012Updated 13 years ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆381Nov 27, 2025Updated 3 months ago
- ☆14May 7, 2022Updated 3 years ago