knightlab-analyses / reference-frames
☆20Updated 4 years ago
Alternatives and similar repositories for reference-frames:
Users that are interested in reference-frames are comparing it to the libraries listed below
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- A microbiome analysis toolkit for R☆22Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 11 months ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆32Updated 5 years ago
- Transform files to the microtable object with microeco package☆25Updated 3 months ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 10 months ago
- Speedy versions of phyloseq functions☆47Updated 11 months ago
- Linear Decomposition Model☆24Updated last year
- ☆12Updated 3 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- ☆23Updated 4 years ago
- ☆54Updated this week
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆27Updated 2 years ago
- selbal: selection of balances for microbial signatures☆31Updated last month
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆14Updated 2 years ago
- Plot microbiome time series in parallel☆26Updated last year
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 2 years ago
- functions for analyzing phyloseq data☆26Updated last month
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆22Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆29Updated 8 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago