zellerlab / crc_metaLinks
Code and analysis results for the CRC shotgun meta-analysis
☆38Updated 3 years ago
Alternatives and similar repositories for crc_meta
Users that are interested in crc_meta are comparing it to the libraries listed below
Sorting:
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆59Updated 5 months ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last year
- ☆13Updated 11 months ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆57Updated last year
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆42Updated 5 years ago
- ☆46Updated 5 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- Course material for the metagenomics course☆46Updated 3 years ago
- ☆57Updated last year
- Statistical analysis for sparse high-throughput sequencing☆70Updated 11 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Scripts for stat and plot figures in rice microbiome paper☆20Updated 6 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Updated 3 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- R implementation of the LEfSe method☆61Updated this week
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆62Updated 3 years ago
- Microbiome Protocol eBook related documents and scripts.☆49Updated 4 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- ☆85Updated last year
- Metagenomics Workshop☆28Updated 8 years ago
- ☆24Updated 5 years ago
- ☆32Updated 2 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆150Updated last year
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Updated 6 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆47Updated this week
- gutSMASH☆56Updated last month
- ☆33Updated 4 years ago