zellerlab / crc_meta
Code and analysis results for the CRC shotgun meta-analysis
☆38Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for crc_meta
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆52Updated 9 months ago
- ☆54Updated 8 months ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆52Updated 2 months ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 5 years ago
- Course material for the metagenomics course☆43Updated 2 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆57Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆67Updated 8 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆26Updated 2 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆109Updated 6 months ago
- ☆44Updated 4 years ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆32Updated 7 months ago
- A general metagenomics data mining system focus on robust microbiome research☆56Updated 2 months ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last month
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆47Updated 2 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆31Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆26Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆29Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆32Updated this week
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆99Updated 10 months ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆37Updated 4 years ago
- Microbiome Protocol eBook related documents and scripts.☆45Updated 3 years ago
- Compare different differential abundance and expression methods☆50Updated 2 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆33Updated 3 years ago
- Metatranscriptomics Tutorial☆55Updated last year
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago