waldronlab / curatedMetagenomicDataLinks
Curated Metagenomic Data of the Human Microbiome
☆145Updated last month
Alternatives and similar repositories for curatedMetagenomicData
Users that are interested in curatedMetagenomicData are comparing it to the libraries listed below
Sorting:
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Updated 2 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆151Updated 2 weeks ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆122Updated last year
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Updated 4 months ago
- A companion R package for the MicrobiomeAnalyst web server☆130Updated this week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆167Updated 3 months ago
- ☆58Updated last year
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆140Updated last week
- Statistical Analysis of Metagenomic Profiles☆94Updated 5 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆130Updated 2 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 3 years ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆39Updated last year
- Neural networks for microbe-metabolite interaction analysis☆126Updated 3 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆116Updated last month
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- ☆86Updated last year
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆83Updated 6 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆123Updated 4 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆126Updated 3 months ago
- Cross-disease comparison of case-control gut microbiome studies☆69Updated 6 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆59Updated 6 months ago
- A robust, extensible metagenomics pipeline☆174Updated last week
- Course material for the metagenomics course☆47Updated 3 years ago
- Orchestrating Microbiome Analysis☆105Updated 3 weeks ago
- Import qiime2 artifacts to R☆173Updated last year
- Learning the Variant Call Format☆148Updated 4 months ago
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆229Updated 3 weeks ago
- Rapid and scalable correlation estimation for compositional data☆96Updated last year