waldronlab / curatedMetagenomicData
Curated Metagenomic Data of the Human Microbiome
☆129Updated 2 months ago
Alternatives and similar repositories for curatedMetagenomicData:
Users that are interested in curatedMetagenomicData are comparing it to the libraries listed below
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆112Updated 8 months ago
- A companion R package for the MicrobiomeAnalyst web server☆119Updated 3 weeks ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆112Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆150Updated last year
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆83Updated 6 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated last month
- ☆55Updated 10 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆112Updated last week
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆107Updated 2 months ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆130Updated 2 months ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 4 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆90Updated 2 years ago
- Course material for the metagenomics course☆43Updated 2 years ago
- Metatranscriptomics Tutorial☆60Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- Pipeline to fetch metadata and raw FastQ files from public databases☆157Updated this week
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆102Updated last year
- Match up paired end fastq files quickly and efficiently.☆144Updated 7 months ago
- Convert various sequence formats to FASTA☆127Updated 2 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆117Updated 3 weeks ago
- Neural networks for microbe-metabolite interaction analysis☆118Updated 2 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆190Updated this week
- Download FASTQ files from SRA or ENA repositories.☆294Updated 2 months ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆180Updated 5 months ago
- Web application to explore the Sequence Read Archive.☆206Updated last week
- Check strandedness of RNA-Seq fastq files☆118Updated 2 years ago
- ☆59Updated 5 years ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆105Updated 4 years ago
- Learning the Variant Call Format☆138Updated 9 months ago