Alternatives and similar repositories for curatedMetagenomicData

Users that are interested in curatedMetagenomicData are comparing it to the libraries listed below

• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆116Updated 2 years ago
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆128Updated 3 weeks ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆122Updated last year
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆151Updated last year
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆165Updated 3 months ago
• donovan-h-parks / STAMP
  Statistical Analysis of Metagenomic Profiles
  ☆93Updated 5 years ago
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆91Updated 3 months ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆71Updated 11 months ago
• caporaso-lab / mockrobiota
  A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
  ☆83Updated 6 years ago
• sunbeam-labs / sunbeam
  A robust, extensible metagenomics pipeline
  ☆174Updated last week
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆36Updated 2 years ago
• nearinj / Comparison_of_DA_microbiome_methods
  ☆58Updated last year
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆127Updated last month
• biocore / mmvec
  Neural networks for microbe-metabolite interaction analysis
  ☆125Updated 3 years ago
• FrederickHuangLin / ANCOM-Code-Archive
  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…
  ☆61Updated 3 years ago
• twbattaglia / MicrobeDS
  A repository for large-scale microbiome datasets, formatted for phyloseq
  ☆39Updated last year
• biobakery / kneaddata
  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
  ☆136Updated last month
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆80Updated last year
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆162Updated 2 weeks ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆218Updated 4 months ago
• SegataLab / lefse
  ☆86Updated last year
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆116Updated last week
• microbiome / OMA
  Orchestrating Microbiome Analysis
  ☆105Updated this week
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆123Updated 4 months ago
• sanger-pathogens / pathogen-informatics-training
  ☆74Updated 4 years ago
• borenstein-lab / microbiome-metabolome-curated-data
  ☆76Updated last year
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆91Updated 4 months ago
• Gibbons-Lab / isb_course_2020
  Materials and tutorials for the 2020 ISB Microbiome Course
  ☆31Updated 3 years ago
• Zymo-Research / figaro
  An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
  ☆94Updated last year
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆126Updated 3 months ago