waldronlab / curatedMetagenomicData
Curated Metagenomic Data of the Human Microbiome
☆129Updated 2 weeks ago
Alternatives and similar repositories for curatedMetagenomicData:
Users that are interested in curatedMetagenomicData are comparing it to the libraries listed below
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆137Updated 5 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆115Updated 11 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 4 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆155Updated 2 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆113Updated 2 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆89Updated 2 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆117Updated last month
- ☆56Updated last year
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆57Updated 7 months ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆38Updated last year
- A companion R package for the MicrobiomeAnalyst web server☆123Updated this week
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆30Updated 2 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆109Updated last year
- Web application to explore the Sequence Read Archive.☆216Updated last month
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆87Updated 9 months ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆112Updated 2 weeks ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆81Updated 5 years ago
- Course material for the metagenomics course☆44Updated 3 years ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆144Updated this week
- A robust, extensible metagenomics pipeline☆169Updated this week
- Neural networks for microbe-metabolite interaction analysis☆119Updated 2 years ago
- ☆85Updated 11 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆195Updated 8 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Metatranscriptomics Tutorial☆62Updated last year
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆78Updated this week
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆178Updated 2 weeks ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- Rapid and scalable correlation estimation for compositional data☆87Updated 11 months ago