waldronlab / curatedMetagenomicDataLinks
Curated Metagenomic Data of the Human Microbiome
☆138Updated 3 weeks ago
Alternatives and similar repositories for curatedMetagenomicData
Users that are interested in curatedMetagenomicData are comparing it to the libraries listed below
Sorting:
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆115Updated 2 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆144Updated 8 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- A companion R package for the MicrobiomeAnalyst web server☆127Updated last month
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Updated 3 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆161Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 7 months ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆117Updated 2 months ago
- A robust, extensible metagenomics pipeline☆172Updated this week
- A repository for large-scale microbiome datasets, formatted for phyloseq☆38Updated last year
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆81Updated 6 years ago
- ☆57Updated last year
- ☆72Updated 4 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆113Updated last year
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆124Updated last month
- Neural networks for microbe-metabolite interaction analysis☆121Updated 2 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- ☆46Updated 5 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆124Updated 2 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆87Updated last week
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆57Updated 2 months ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆56Updated last year
- Cross-disease comparison of case-control gut microbiome studies☆68Updated 6 years ago
- Bioinformatics Tools☆89Updated last week
- Orchestrating Microbiome Analysis☆100Updated this week
- gutSMASH☆55Updated 7 months ago
- Rapid and scalable correlation estimation for compositional data☆92Updated last year
- Tips for Nextflow and cheatsheet for channel operation☆78Updated 11 months ago