Curated Metagenomic Data of the Human Microbiome
☆151Apr 9, 2026Updated this week
Alternatives and similar repositories for curatedMetagenomicData
Users that are interested in curatedMetagenomicData are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sample Metadata Curation for curatedMetagenomicData☆30Mar 26, 2026Updated 2 weeks ago
- Analyses in R and Python Using curatedMetagenomicData☆36Nov 16, 2025Updated 4 months ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Mar 26, 2026Updated 2 weeks ago
- Code and analysis results for the CRC shotgun meta-analysis☆39Sep 28, 2022Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Feb 3, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- StrainFinder☆30Jul 8, 2018Updated 7 years ago
- ☆32Jun 12, 2023Updated 2 years ago
- ATLAS - Three commands to start analyzing your metagenome data☆404Nov 28, 2025Updated 4 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Mar 26, 2026Updated 2 weeks ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 4 months ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 5 years ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆83May 14, 2019Updated 6 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆132Oct 6, 2023Updated 2 years ago
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- bioBakery tools for meta'omic profiling☆312Jun 3, 2025Updated 10 months ago
- gutSMASH☆59Oct 3, 2025Updated 6 months ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated last year
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆153Feb 5, 2026Updated 2 months ago
- Cross-disease comparison of case-control gut microbiome studies☆69Feb 2, 2019Updated 7 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- SHallow shOtGUN profiler☆52Mar 4, 2022Updated 4 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆242Jan 20, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Orchestrating Microbiome Analysis☆108Mar 26, 2026Updated 3 weeks ago
- microbiome R package☆314Aug 19, 2025Updated 7 months ago
- 🌈 Interactive analysis of metagenomics data☆447Sep 17, 2025Updated 6 months ago
- ☆37Jan 13, 2022Updated 4 years ago
- A workshop on microbiome analysis using Bioconductor☆15Jun 20, 2019Updated 6 years ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆58Jan 30, 2024Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆126Mar 30, 2026Updated 2 weeks ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Sep 14, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 5 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆399Mar 16, 2026Updated 3 weeks ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Nov 5, 2025Updated 5 months ago
- A complete pipeline for metagenomic analysis☆439Updated this week
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- ☆78Oct 16, 2024Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago