Alternatives and similar repositories for earthnetwork

Users that are interested in earthnetwork are comparing it to the libraries listed below

• qichao1984 / NCyc
  ☆53Updated 5 years ago
• caporaso-lab / sourcetracker2
  SourceTracker2
  ☆84Updated last year
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆91Updated 3 months ago
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆13Updated last year
• danknights / sourcetracker
  ☆78Updated 2 years ago
• Russel88 / DOC
  Dissimilarity Overlap Curve analysis
  ☆11Updated 3 years ago
• minoh0201 / MetaCompare
  MetaCompare
  ☆19Updated last year
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆31Updated 7 years ago
• xuechunxu / DiTing
  DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
  ☆50Updated last year
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆36Updated last week
• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆36Updated 11 years ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆81Updated 2 years ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆33Updated last year
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆123Updated this week
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆169Updated 4 months ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆72Updated 2 years ago
• ukaraoz / microtrait
  ☆44Updated last year
• scwatts / fastspar
  Rapid and scalable correlation estimation for compositional data
  ☆97Updated last year
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆72Updated 3 years ago
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆46Updated 4 years ago
• Zymo-Research / figaro
  An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
  ☆95Updated last year
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆128Updated last year
• biobakery / maaslin3
  MaAsLin3: Microbiome Multivariate Association with Linear Models
  ☆63Updated 2 months ago
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆117Updated 2 years ago
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆66Updated 2 years ago
• caozhichongchong / arg_ranker
  ☆35Updated 2 months ago
• Linwei-Wu / Global-bacterial-diversity-in-WWTPs
  ☆23Updated 6 years ago
• ChiLiubio / file2meco
  Transform files to the microtable object with microeco package
  ☆28Updated 2 months ago
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆86Updated last year
• cdanielmachado / smetana
  SMETANA: a tool to analyse interactions in microbial communities
  ☆66Updated 8 months ago