microbma / earthnetworkLinks
Microbial co-occurrence network inferred from Earth Microbiome Project
☆25Updated 5 years ago
Alternatives and similar repositories for earthnetwork
Users that are interested in earthnetwork are comparing it to the libraries listed below
Sorting:
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 8 months ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆81Updated 6 months ago
- ☆76Updated last year
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆33Updated 3 weeks ago
- MetaCompare☆19Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- ☆49Updated 4 years ago
- SourceTracker2☆78Updated last year
- dada2 formatted nifH database☆12Updated last year
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Rapid and scalable correlation estimation for compositional data☆92Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 2 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆90Updated last year
- Statistics and visualization for amplicon data☆70Updated 2 years ago
- ☆33Updated 2 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆62Updated 2 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- ☆23Updated 6 years ago
- Fast expectation maximization for microbial source tracking☆127Updated last year
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆82Updated last month
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆61Updated 4 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 11 months ago
- Microbial ecological network visualization clustering☆121Updated 4 months ago
- Generating iToL annotations from Spreadsheet or CSV files☆103Updated 5 years ago
- Transform files to the microtable object with microeco package☆27Updated 4 months ago
- ☆17Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated last year