Microbial co-occurrence network inferred from Earth Microbiome Project
☆27Apr 22, 2020Updated 6 years ago
Alternatives and similar repositories for earthnetwork
Users that are interested in earthnetwork are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R scripts for performing co-occurrence analyses☆36Jan 7, 2015Updated 11 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆96Updated this week
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Feb 23, 2018Updated 8 years ago
- Database of genomes integrated from the gut microbiome and other environments☆46Feb 3, 2023Updated 3 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆39Jul 12, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- ☆15Oct 14, 2023Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆47Oct 3, 2023Updated 2 years ago
- Automatic Calculation of Effects for Piecewise Structural Equation Models☆16Sep 13, 2024Updated last year
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆16May 24, 2023Updated 3 years ago
- R package computes correlation for relative abundances☆13May 22, 2017Updated 9 years ago
- Network construction, analysis, and comparison for microbial compositional data☆182Jul 7, 2026Updated last month
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆93Oct 9, 2025Updated 10 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆19Mar 17, 2021Updated 5 years ago
- R and python scripts for correlation-based network analysis☆61May 17, 2020Updated 6 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆19Jul 27, 2022Updated 4 years ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- This is a read-only mirror of the CRAN R package repository. TOmicsVis — Transcriptome Visualization Process Scheme. Homepage: https://…☆17Aug 28, 2023Updated 3 years ago
- ☆13Jun 1, 2021Updated 5 years ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆21May 22, 2020Updated 6 years ago
- ☆19Jun 25, 2025Updated last year
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23May 16, 2026Updated 3 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- ☆12Aug 13, 2024Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Nov 8, 2019Updated 6 years ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Bioinformatics scripts☆14Dec 23, 2024Updated last year
- A tutorial for Metagenome-Atlas☆24Nov 24, 2023Updated 2 years ago
- Host prediction for phages☆29Nov 6, 2024Updated last year
- 历史文档备份(只包含2019年和2020年)☆205Jul 20, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆71Aug 10, 2021Updated 5 years ago
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated last year
- Phage-Host Interaction Search Tool☆33Jul 8, 2024Updated 2 years ago
- ☆11Jan 24, 2023Updated 3 years ago
- A user configurable Spectrum Analyzer Application featuring a frequency range from 10 MHz to 3.5 GHz and a maximum resolution bandwidth o…☆15Jun 19, 2022Updated 4 years ago
- CarveMe: genome-scale metabolic model reconstruction☆217Sep 12, 2025Updated 11 months ago