microbma / earthnetwork

Related projects: ⓘ

• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆34Updated 9 years ago
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆11Updated 4 months ago
• statdivlab / radEmu
  ☆46Updated 2 weeks ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆69Updated 2 years ago
• ChiLiubio / file2meco
  Tranform files to the microtable object in microeco package
  ☆22Updated last week
• bwemheu / Tax4Fun2
  ☆36Updated this week
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆29Updated 6 years ago
• danknights / sourcetracker
  ☆67Updated 9 months ago
• Russel88 / DOC
  Dissimilarity Overlap Curve analysis
  ☆11Updated last year
• qichao1984 / NCyc
  ☆44Updated 3 years ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆27Updated 2 months ago
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆26Updated last year
• microUCPH / amplicon_data_analysis
  Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
  ☆11Updated 2 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆52Updated 3 weeks ago
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆49Updated 2 years ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆31Updated 4 years ago
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆65Updated last year
• victoriapascal / gutsmash
  gutSMASH
  ☆51Updated 4 months ago
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆27Updated last month
• mestaki / qiime2-to-BugBase
  ☆12Updated 2 years ago
• nearinj / Comparison_of_DA_microbiome_methods
  ☆53Updated 6 months ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆62Updated 8 months ago
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆45Updated 3 years ago
• caozhichongchong / arg_ranker
  ☆24Updated 8 months ago
• caporaso-lab / sourcetracker2
  SourceTracker2
  ☆62Updated 2 months ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆65Updated 6 months ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆18Updated last year
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆40Updated 3 months ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆68Updated last year
• agmcfarland / r_phylogenetics_worshop
  Using ggtree to build phylogenetic trees
  ☆45Updated last year