microbma / earthnetworkLinks
Microbial co-occurrence network inferred from Earth Microbiome Project
☆26Updated 5 years ago
Alternatives and similar repositories for earthnetwork
Users that are interested in earthnetwork are comparing it to the libraries listed below
Sorting:
- ☆78Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆88Updated last month
- ☆50Updated 4 years ago
- dada2 formatted nifH database☆12Updated last year
- SourceTracker2☆80Updated last year
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- R scripts for performing co-occurrence analyses☆35Updated 10 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- FUNGuild: parsing OTUs into functional guilds☆123Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Rapid and scalable correlation estimation for compositional data☆95Updated last year
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆35Updated 2 months ago
- Dissimilarity Overlap Curve analysis☆11Updated 3 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- ☆35Updated 2 weeks ago
- Statistics and visualization for amplicon data☆72Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆49Updated this week
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆83Updated 3 weeks ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆51Updated 4 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆122Updated 3 months ago
- ☆42Updated last year
- MetaCompare☆19Updated last year
- Generating iToL annotations from Spreadsheet or CSV files☆106Updated 5 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆165Updated 2 months ago
- ☆23Updated 6 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year