microbma / earthnetworkLinks
Microbial co-occurrence network inferred from Earth Microbiome Project
☆25Updated 5 years ago
Alternatives and similar repositories for earthnetwork
Users that are interested in earthnetwork are comparing it to the libraries listed below
Sorting:
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 10 months ago
- ☆50Updated 4 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆86Updated 7 months ago
- ☆77Updated last year
- dada2 formatted nifH database☆12Updated last year
- MetaCompare☆19Updated last year
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- ☆34Updated 3 months ago
- SourceTracker2☆80Updated last year
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆92Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated last year
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆34Updated last month
- ☆40Updated last year
- FUNGuild: parsing OTUs into functional guilds☆120Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆45Updated 3 weeks ago
- Sydney Phylogenetics Workshop☆66Updated 2 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆70Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆62Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆77Updated 8 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆59Updated 6 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆87Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago