microbma / earthnetworkLinks
Microbial co-occurrence network inferred from Earth Microbiome Project
☆26Updated 5 years ago
Alternatives and similar repositories for earthnetwork
Users that are interested in earthnetwork are comparing it to the libraries listed below
Sorting:
- ☆78Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆89Updated 2 months ago
- Dissimilarity Overlap Curve analysis☆11Updated 3 years ago
- dada2 formatted nifH database☆13Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- SourceTracker2☆81Updated last year
- ☆51Updated 4 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- R scripts for performing co-occurrence analyses☆35Updated 10 years ago
- FUNGuild: parsing OTUs into functional guilds☆123Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆48Updated last year
- ☆35Updated last month
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Updated 3 months ago
- MetaCompare☆19Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆165Updated 3 months ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- Rapid and scalable correlation estimation for compositional data☆95Updated last year
- Fast expectation maximization for microbial source tracking☆135Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆116Updated 2 years ago
- ☆60Updated this week
- ☆43Updated last year
- 🍄 Qiime2 ITS classifiers for the UNITE database☆47Updated 4 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆49Updated 3 weeks ago
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- ☆39Updated 8 months ago