Alternatives and similar repositories for earthnetwork

Users that are interested in earthnetwork are comparing it to the libraries listed below

• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆29Updated 7 years ago
• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆34Updated 10 years ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆30Updated 10 months ago
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆31Updated 4 months ago
• qichao1984 / NCyc
  ☆49Updated 4 years ago
• danknights / sourcetracker
  ☆74Updated last year
• Russel88 / DOC
  Dissimilarity Overlap Curve analysis
  ☆11Updated 2 years ago
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆11Updated last year
• xuechunxu / DiTing
  DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
  ☆46Updated 6 months ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆44Updated 2 years ago
• statdivlab / radEmu
  ☆55Updated 2 weeks ago
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆76Updated 4 months ago
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆46Updated 3 years ago
• allind / EukDetect
  ☆50Updated last year
• caozhichongchong / arg_ranker
  ☆30Updated last week
• ChiLiubio / file2meco
  Transform files to the microtable object with microeco package
  ☆27Updated 2 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆71Updated 2 years ago
• minoh0201 / MetaCompare
  MetaCompare
  ☆18Updated last year
• ErnakovichLab / dada2_ernakovichlab
  ☆16Updated this week
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated 4 months ago
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆88Updated 9 months ago
• spxuw / DKI
  ☆36Updated 2 months ago
• Weidong-Chen-Microbial-Ecology / Stochastic-assembly-of-river-microeukaryotes
  ☆14Updated 5 years ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆66Updated last year
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆60Updated 4 years ago
• ukaraoz / microtrait
  ☆38Updated last year
• Jiung-Wen / picrust_mapping
  mapping files for MetaCyc pathway
  ☆12Updated 5 years ago
• colinbrislawn / unite-train
  🍄 Qiime2 ITS classifiers for the UNITE database
  ☆39Updated 2 months ago
• xinehc / args_oap
  ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…
  ☆54Updated 2 months ago
• caporaso-lab / sourcetracker2
  SourceTracker2
  ☆74Updated 10 months ago