PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
☆46Oct 3, 2023Updated 2 years ago
Alternatives and similar repositories for panphlan
Users that are interested in panphlan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 2 years ago
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆20Mar 3, 2023Updated 3 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated last month
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Bioinformatics program inStrain☆184Mar 12, 2026Updated 3 weeks ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Nov 9, 2022Updated 3 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆132Oct 6, 2023Updated 2 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆398Mar 16, 2026Updated 3 weeks ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆172Mar 13, 2026Updated 3 weeks ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆163Feb 13, 2026Updated last month
- ☆63Feb 27, 2024Updated 2 years ago
- ☆20Dec 13, 2023Updated 2 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆110Jun 28, 2021Updated 4 years ago
- ☆21Feb 13, 2020Updated 6 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆328Mar 30, 2026Updated last week
- shotgun pipeline☆12Apr 3, 2019Updated 7 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Improvement of metagenome-assembled genomes☆55Mar 17, 2020Updated 6 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Feb 3, 2023Updated 3 years ago
- Woltka: a versatile meta'omic data classifier☆77Sep 8, 2025Updated 7 months ago
- Model-based Integration of Metabolite Observations and Species Abundances☆24Feb 21, 2020Updated 6 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆51Feb 26, 2026Updated last month
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jan 15, 2026Updated 2 months ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- Course material for the metagenomics course☆47Mar 2, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆44Mar 26, 2024Updated 2 years ago
- Graph-based assembly phasing☆93Nov 25, 2025Updated 4 months ago
- Rapid comparison and dereplication of genomes☆333Nov 10, 2025Updated 4 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆371Aug 1, 2025Updated 8 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆193Apr 1, 2026Updated last week
- An updated pipeline for pangenome investigation☆353Jan 15, 2026Updated 2 months ago
- Add biological annotations to variants in a given VCF file.☆32Updated this week