ohmeta / quantpiLinks
Microbiome profiling
☆15Updated 3 weeks ago
Alternatives and similar repositories for quantpi
Users that are interested in quantpi are comparing it to the libraries listed below
Sorting:
- A shiny package for microbiome functional enrichment analysis☆38Updated last week
- gutSMASH☆55Updated 2 months ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆22Updated 11 months ago
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 6 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- ☆41Updated 8 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 3 weeks ago
- R implementation of the LEfSe method☆61Updated 3 weeks ago
- ☆32Updated 11 months ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- ☆18Updated 4 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆57Updated last year
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆12Updated 6 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 5 months ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated 11 months ago
- ☆24Updated 5 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- ☆11Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- R package computes correlation for relative abundances☆13Updated 8 years ago