ohmeta / quantpi
Microbiome profiling
☆16Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for quantpi
- A shiny package for microbiome functional enrichment analysis☆36Updated last week
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆34Updated 7 months ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- ☆21Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 6 months ago
- ☆10Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 2 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆14Updated 2 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- Ontology-aware neural network (ONN) for microbial community sample source tracking!☆11Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆22Updated 9 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated 11 months ago
- tidyMicro GitHup Repository☆18Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last month
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆14Updated 2 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- Dadaist2 🟨 Highway to R☆13Updated 8 months ago
- Factorize metagenotypes to infer strains and their abundances☆11Updated last month
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆27Updated 9 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- ☆11Updated 9 months ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated 5 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year