Alternatives and similar repositories for rfmix

Users that are interested in rfmix are comparing it to the libraries listed below

• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆22Updated 5 months ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆130Updated this week
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• AI-sandbox / gnomix
  A fast, scalable, and accurate local ancestry method.
  ☆98Updated last year
• rwdavies / STITCH
  STITCH - Sequencing To Imputation Through Constructing Haplotypes
  ☆81Updated 3 weeks ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆50Updated 3 months ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆64Updated last week
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆73Updated 3 years ago
• odelaneau / shapeit5
  Segmented HAPlotype Estimation and Imputation Tool
  ☆84Updated last week
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• AI-sandbox / neural-admixture
  Rapid population clustering with autoencoders
  ☆77Updated last month
• rcc-uchicago / genetic-data-analysis-2
  RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."
  ☆24Updated 2 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆67Updated 2 years ago
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 6 years ago
• armartin / ancestry_pipeline
  Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
  ☆110Updated 3 years ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆85Updated 6 years ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆38Updated 3 months ago
• nf-core / isoseq
  Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …
  ☆44Updated last week
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆26Updated 11 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆86Updated 3 years ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆49Updated 3 weeks ago
• yairf / SDS
  R code to compute the Singleton Density Score (SDS)
  ☆31Updated 8 years ago
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆58Updated 2 years ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆122Updated 9 months ago
• shohei-kojima / MEGAnE
  MEGAnE
  ☆31Updated last year
• PapenfussLab / sv_benchmark
  Comprehensive benchmark of structural variant callers
  ☆46Updated 4 years ago
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆65Updated 3 months ago