slowkoni / rfmix
RFMIX - Local Ancestry and Admixture Inference Version 2
☆82Updated 2 years ago
Alternatives and similar repositories for rfmix:
Users that are interested in rfmix are comparing it to the libraries listed below
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆57Updated 4 months ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Enhanced version of the FastQTL QTL mapper☆64Updated 2 years ago
- Haplotype based scans for selection☆123Updated this week
- Report reverse and ambiguous strand SNPs in GWAS data☆32Updated 5 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆76Updated 7 months ago
- A set of tools for modelling ancestry patterns along the genome.☆22Updated last month
- ☆40Updated 7 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆49Updated last year
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆49Updated 6 years ago
- ☆30Updated 3 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆22Updated 7 months ago
- processing illumina SNP arrays☆19Updated 8 years ago
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."☆24Updated last year
- Pinpoints the mutation favored by selection☆33Updated 3 years ago
- ☆40Updated 5 months ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆32Updated last year
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- Sequence kernel association test (SKAT)☆46Updated last month
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆47Updated last month
- R code to compute the Singleton Density Score (SDS)☆28Updated 8 years ago
- Scripts for GWAS association and metaanalysis☆43Updated 4 years ago
- MOsaic CHromosomal Alterations (MoChA) caller☆84Updated last month
- ☆78Updated 11 years ago
- Fast analysis and visualization of latent clusters in population genetic data☆73Updated 2 years ago
- Statistical tools for Quantitative Genetic Analyses☆36Updated this week
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆79Updated last month