grenaud / ROHanLinks
Joint inference of heterozygosity rates and runs of homozygosity
☆15Updated 9 months ago
Alternatives and similar repositories for ROHan
Users that are interested in ROHan are comparing it to the libraries listed below
Sorting:
- Likelihood-based Selective Sweep Detection☆38Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 9 months ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Infer demographic history with the Moran model☆47Updated last week
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated last month
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Software for ancestry estimation in unrelated individuals☆20Updated 2 weeks ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆20Updated 5 years ago
- ☆16Updated 3 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆17Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- ☆24Updated 8 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 8 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- ☆12Updated 5 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated last month
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- ☆26Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 11 months ago
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago