Joint inference of heterozygosity rates and runs of homozygosity
☆18Dec 12, 2025Updated 3 months ago
Alternatives and similar repositories for ROHan
Users that are interested in ROHan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- ☆15Dec 3, 2024Updated last year
- ☆14May 30, 2024Updated last year
- Sex assignment through coverage☆20May 23, 2025Updated 10 months ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- Method for dating admixture in ancient DNA specimens☆28Jan 12, 2022Updated 4 years ago
- GONE: Scripts, programs and an example data set☆52Jul 20, 2025Updated 8 months ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆15Aug 11, 2023Updated 2 years ago
- ☆13Sep 11, 2025Updated 6 months ago
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- ☆19May 27, 2022Updated 3 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- Time-stratified f-statistics☆15Aug 1, 2025Updated 7 months ago
- Programs for performing various population genetic analyses☆12Dec 2, 2024Updated last year
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆66Sep 19, 2025Updated 6 months ago
- Estimating Effective Migration Surfaces☆111Oct 28, 2023Updated 2 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 4 months ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆40Nov 15, 2023Updated 2 years ago
- R package and web app for spatial visualisation of admixture on a projected map☆46Apr 3, 2025Updated 11 months ago
- ☆12Sep 6, 2019Updated 6 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Sep 17, 2024Updated last year
- ☆13May 13, 2024Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- an R package for admixture analyses☆18May 15, 2015Updated 10 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆20Dec 3, 2022Updated 3 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40May 21, 2020Updated 5 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Aug 21, 2018Updated 7 years ago
- ☆46Mar 18, 2025Updated last year
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- SCAT software for "Smoothed and Continuous Assignment Tests"☆29Mar 29, 2023Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- A course with Jupyter Notebooks for Computational Population Genetics☆10Sep 4, 2022Updated 3 years ago
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆35Jun 17, 2024Updated last year