grenaud / ROHanLinks
Joint inference of heterozygosity rates and runs of homozygosity
☆15Updated last year
Alternatives and similar repositories for ROHan
Users that are interested in ROHan are comparing it to the libraries listed below
Sorting:
- Infer demographic history with the Moran model☆48Updated 3 months ago
- Tools and Utilities for msmc and msmc2☆48Updated last month
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆24Updated 8 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆18Updated 4 months ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆35Updated 4 years ago
- GONE: Scripts, programs and an example data set☆46Updated 2 months ago
- Quantifying Introgression via Branch Lengths☆54Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- ☆25Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- ☆17Updated 3 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago
- ☆52Updated 3 months ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 6 months ago
- ☆12Updated 6 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Updated last year