Joint inference of heterozygosity rates and runs of homozygosity
☆23Aug 11, 2026Updated this week
Alternatives and similar repositories for ROHan
Users that are interested in ROHan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 3 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- ☆18Dec 3, 2024Updated last year
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆27Jul 8, 2022Updated 4 years ago
- Method for dating admixture in ancient DNA specimens☆33Jan 12, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 3 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆75Apr 9, 2026Updated 4 months ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆16Aug 11, 2023Updated 3 years ago
- ☆13Sep 11, 2025Updated 11 months ago
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Time-stratified f-statistics☆17Aug 1, 2025Updated last year
- Estimating Effective Migration Surfaces☆112Oct 28, 2023Updated 2 years ago
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 9 months ago
- R package and web app for spatial visualisation of admixture on a projected map☆47Apr 3, 2025Updated last year
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆43Nov 15, 2023Updated 2 years ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- ☆12Sep 6, 2019Updated 6 years ago
- ☆13May 13, 2024Updated 2 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Sep 17, 2024Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19May 27, 2022Updated 4 years ago
- an R package for admixture analyses☆19May 15, 2015Updated 11 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 3 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- Callable Loci... and more☆19Apr 8, 2026Updated 4 months ago
- ☆16Jan 6, 2022Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆29Aug 21, 2018Updated 7 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆14Feb 26, 2021Updated 5 years ago
- SMC++ infers population history from whole-genome sequence data.☆177Jan 20, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆50Jun 26, 2026Updated last month
- Quantifying Introgression via Branch Lengths☆58Sep 30, 2022Updated 3 years ago
- A course with Jupyter Notebooks for Computational Population Genetics☆10Sep 4, 2022Updated 3 years ago
- A pipeline that accepts a VCF file to run through Admixture☆66May 3, 2026Updated 3 months ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆22Dec 3, 2022Updated 3 years ago
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆36Jun 17, 2024Updated 2 years ago