Alternatives and similar repositories for PRScsx

Users that are interested in PRScsx are comparing it to the libraries listed below

• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆53Updated 4 months ago
• FinucaneLab / pops
  ☆82Updated last month
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆49Updated 3 months ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆124Updated 9 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆73Updated this week
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆60Updated 6 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆48Updated 3 months ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆52Updated last month
• zhilizheng / SBayesRC
  ☆41Updated 2 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆68Updated 11 months ago
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆66Updated 5 months ago
• Kyoko-wtnb / FUMA-webapp
  Source code of FUMA GWAS web application
  ☆58Updated last year
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆70Updated 4 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆88Updated 3 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆33Updated 3 months ago
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆69Updated 3 months ago
• statgen / METAL
  Meta-analysis of genomewide association scans
  ☆60Updated last year
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆47Updated last week
• dvitale199 / GenoTools
  GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…
  ☆29Updated 3 weeks ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆85Updated 3 years ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆82Updated this week
• clagiamba / moloc
  ☆36Updated 4 years ago
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆85Updated last year
• stormlovetao / eQTLQC
  ☆26Updated 4 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆68Updated 2 years ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆52Updated 6 months ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆122Updated 2 months ago