ohlerlab / PARpipeLinks
Complete analysis pipeline for PAR-CLIP data
☆10Updated 10 years ago
Alternatives and similar repositories for PARpipe
Users that are interested in PARpipe are comparing it to the libraries listed below
Sorting:
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 2 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 11 months ago
- Analysis pipeline for the GUIDE-seq assay.☆81Updated 2 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆59Updated 11 months ago
- ☆74Updated 4 years ago
- ☆48Updated 3 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆108Updated 2 months ago
- ☆50Updated 4 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆85Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 5 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆84Updated last year
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Updated 3 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆77Updated 5 years ago
- Workflows for converting between sequence data formats☆40Updated 4 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆152Updated last year
- FlashFry: The rapid CRISPR target site characterization tool☆79Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Extract data quickly from Juicebox via straw☆69Updated 9 months ago
- Updated DANPOS2 to work with python3☆24Updated last year
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆114Updated last year
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 9 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- ☆60Updated 6 months ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆74Updated last month
- IDR☆30Updated 2 years ago