Complete analysis pipeline for PAR-CLIP data
☆10May 7, 2015Updated 10 years ago
Alternatives and similar repositories for PARpipe
Users that are interested in PARpipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Perl/R pipeline for plotting metagenes☆37Mar 21, 2026Updated 3 weeks ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆19Aug 9, 2023Updated 2 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 4 years ago
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- An attempt to help anyone interested in using Perl for Bioinformatics☆35Dec 4, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- R scripts for NGS data visualization☆13Oct 1, 2025Updated 6 months ago
- An Interactive Consensus Clustering framework for Cross-platform data analysis☆14Jan 28, 2022Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- Short course using RStudio for biological data analysis☆14Jul 7, 2022Updated 3 years ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 4 years ago
- Generate JSON diffs between pixi lockfiles☆10Apr 1, 2026Updated last week
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Code for the paper "Generating and designing DNA with deep generative models" (arXiv:1712.06148)☆42Apr 14, 2018Updated 7 years ago
- A tool to identify CLIP-seq peaks☆72Oct 31, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆11Jan 15, 2020Updated 6 years ago
- Fully Automated and Standardized (FAST) iCLIP analysis pipeline.☆22Oct 7, 2017Updated 8 years ago
- RNA-seq data comprehensive data analysis toolbox☆20Oct 18, 2022Updated 3 years ago
- This repo is for reproducing our results in “Activation Maximization Generative Adversarial Nets”.☆11Sep 26, 2020Updated 5 years ago
- RNA editing quantification in deep transcriptome data☆16Jul 17, 2025Updated 8 months ago
- ☆14Mar 18, 2016Updated 10 years ago
- ☆19Apr 22, 2017Updated 8 years ago
- ☆13Jan 4, 2026Updated 3 months ago
- Reproducibility challenge project for a candidate paper of ICLR2018: Incremental Learning through Deep Adaption☆14Dec 20, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆16Feb 1, 2021Updated 5 years ago
- Exploratory Data Analysis on the levels of CO₂ in the atmosphere. Understanding Climate Change with Machine Learning☆14Oct 24, 2019Updated 6 years ago
- NGS Tutorial☆15Apr 22, 2017Updated 8 years ago
- A little Python software that creates a color-sorted image from any image☆10Jun 12, 2017Updated 8 years ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 8 years ago
- ☆10May 17, 2017Updated 8 years ago
- code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions☆15Nov 27, 2023Updated 2 years ago
- Multi-Enrichment Analysis of Gene Set Enrichment Analysis Results☆27Feb 25, 2026Updated last month
- CLIP Tool Kit (CTK)☆21Apr 28, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Graphical user interface for de novo sequencing of tandem mass spectra☆15Mar 11, 2024Updated 2 years ago
- Workshop lesson for "Dynamic documents with RMarkdown and Knitr" that was hosted on May 11th, 2016 through the Data Intensive Biology Tra…☆13May 13, 2016Updated 9 years ago
- Pytorch Implementation of an A-RNN-LM☆13Feb 7, 2019Updated 7 years ago
- A CNN for denoising cryo-EM images☆13Dec 9, 2019Updated 6 years ago
- UNC-Chapel Hill Bioinformatics Utilities☆24Oct 29, 2015Updated 10 years ago
- Makes distinct TSS of each gene from a Gencode annotation☆10Oct 19, 2016Updated 9 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Dec 20, 2023Updated 2 years ago