Alternatives and similar repositories for PARpipe

Users that are interested in PARpipe are comparing it to the libraries listed below

• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆32Updated 4 years ago
• CRG-Barcelona / bwtool
  A tool for bigWig files.
  ☆118Updated 7 years ago
• 3DGenomes / TADbit
  TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…
  ☆108Updated 2 months ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆81Updated 2 years ago
• parklab / ShatterSeek
  ☆75Updated 2 years ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆50Updated 3 years ago
• andrewrech / antigen.garnish
  ☆48Updated 3 years ago
• aidenlab / straw
  Extract data quickly from Juicebox via straw
  ☆69Updated 10 months ago
• GreenleafLab / NucleoATAC
  nucleosome calling using ATAC-seq
  ☆110Updated 5 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆90Updated 3 months ago
• gatk-workflows / gatk4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
  ☆84Updated 4 years ago
• mckennalab / FlashFry
  FlashFry: The rapid CRISPR target site characterization tool
  ☆79Updated last year
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆153Updated last year
• GoekeLab / proActiv
  Estimation of Promoter Activity from RNA-Seq data
  ☆56Updated 6 months ago
• xjtu-omics / msisensor-pro
  Microsatellite Instability (MSI) detection using high-throughput sequencing data.
  ☆115Updated 10 months ago
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆29Updated 6 months ago
• hbctraining / Intro-to-rnaseq-hpc-salmon
  ☆50Updated 4 years ago
• BUStools / bustools
  Tools for working with BUS files
  ☆102Updated 8 months ago
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆74Updated last week
• asntech / intervene
  Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
  ☆143Updated 2 years ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆75Updated 2 years ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆124Updated this week
• dariober / bioinformatics-cafe
  Unsorted scripts for bioinformatics
  ☆61Updated 4 years ago
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆63Updated 2 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆59Updated 11 months ago
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆115Updated last year
• XiaoTaoWang / HiC_pipeline
  An easy-to-use Hi-C data processing software supporting distributed computation.
  ☆62Updated last year
• 4dn-dcic / hic2cool
  Lightweight converter between hic and cool contact matrices.
  ☆74Updated last year
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆98Updated last month
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆128Updated 3 years ago